--- a
+++ b/man/identifyClusterMarkers.Rd
@@ -0,0 +1,30 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_model.R
+\name{identifyClusterMarkers}
+\alias{identifyClusterMarkers}
+\title{Identify markers in each cell cluster}
+\usage{
+identifyClusterMarkers(object, assay, features = NULL, use.agg = TRUE,
+  test.use = "bimod", thresh.pc = 0.25, thresh.fc = 0.25,
+  thresh.p = 0.01)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{assay}{Name of assay to be analyzed}
+
+\item{features}{a vector of features}
+
+\item{use.agg}{whether use the aggregated data}
+
+\item{test.use}{which test to use ("bimod" or "wilcox")}
+
+\item{thresh.pc}{Threshold of the percent of cells enriched in one cluster}
+
+\item{thresh.fc}{Threshold of Fold Change}
+
+\item{thresh.p}{Threshold of p-values}
+}
+\description{
+Identify markers in each cell cluster
+}