--- a
+++ b/man/featureVisualization.Rd
@@ -0,0 +1,37 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_plotting.R
+\name{featureVisualization}
+\alias{featureVisualization}
+\title{visualize cells on the 2D space with gene expression or chromatian accessibility overlayed}
+\usage{
+featureVisualization(object, assay, feature.use, method = "VscAI",
+  nCol = NULL, xlabel = "VscAI1", ylabel = "VscAI2",
+  cell.size = 0.3, show.legend = T, show.legend.combined = F,
+  show.axes = T)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{assay}{define an assay to show, e.g., assay = "RNA"}
+
+\item{feature.use}{a vector of features}
+
+\item{method}{dimensional reduction method, e.g., VscAI, tsne, umap}
+
+\item{nCol}{number of columns of the plot}
+
+\item{xlabel}{label shown on x-axis}
+
+\item{ylabel}{label shown on y-axis}
+
+\item{cell.size}{the size of points (cells)}
+
+\item{show.legend}{whether show individual legend}
+
+\item{show.legend.combined}{whether just show one legend}
+
+\item{show.axes}{whether show the axes}
+}
+\description{
+visualize cells on the 2D space with gene expression or chromatian accessibility overlayed
+}