--- a
+++ b/man/featureRankingPlot.Rd
@@ -0,0 +1,32 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_plotting.R
+\name{featureRankingPlot}
+\alias{featureRankingPlot}
+\title{Ranking the features (genes/loci) and show the top markers in each factor}
+\usage{
+featureRankingPlot(object, assay, factor.show = NULL, ncol = NULL,
+  feature.show = NULL, feature.show.names = NULL, top.p = 0.5,
+  features.diff = NULL, ylabel = "Weight")
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{assay}{define an assay to show, e.g., assay = "RNA"}
+
+\item{factor.show}{a set of factors to show}
+
+\item{ncol}{number of columns in plot}
+
+\item{feature.show}{a vector of the features that are labeled on the plot}
+
+\item{feature.show.names}{instead of the default name in feature.show, one can show the manual feature name such as the enriched motif}
+
+\item{top.p}{showing the features in top ranking}
+
+\item{features.diff}{a table includes the differential features, returned from identifyfactorMakrers.R}
+
+\item{ylabel}{ylabel shown on the y-axis}
+}
+\description{
+Ranking the features (genes/loci) and show the top markers in each factor
+}