% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/scAI_plotting.R

\name{featureHeatmap}

\alias{featureHeatmap}

\title{generate a heatmap for the expression of differential features across different cell groups}

\usage{

featureHeatmap(object, assay, feature.use, group.by, color.use = NULL,

  use.agg = TRUE, rescaling = TRUE, names.show = TRUE,

  size.names = 8)

}

\arguments{

\item{object}{scAI object}

\item{assay}{define an assay to show, e.g., assay = "RNA"}

\item{feature.use}{a vector of features to show}

\item{group.by}{the name of the variable in pData, defining cell groups. cells are grouped together}

\item{color.use}{colors for the cell clusters}

\item{use.agg}{whether use aggregated data}

\item{rescaling}{whether rescale each feature across all the cells}

\item{names.show}{whether show the feature names}

\item{size.names}{the font size of the feature names}

}

\description{

generate a heatmap for the expression of differential features across different cell groups

}