--- a
+++ b/man/featureHeatmap.Rd
@@ -0,0 +1,32 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/scAI_plotting.R
+\name{featureHeatmap}
+\alias{featureHeatmap}
+\title{generate a heatmap for the expression of differential features across different cell groups}
+\usage{
+featureHeatmap(object, assay, feature.use, group.by, color.use = NULL,
+  use.agg = TRUE, rescaling = TRUE, names.show = TRUE,
+  size.names = 8)
+}
+\arguments{
+\item{object}{scAI object}
+
+\item{assay}{define an assay to show, e.g., assay = "RNA"}
+
+\item{feature.use}{a vector of features to show}
+
+\item{group.by}{the name of the variable in pData, defining cell groups. cells are grouped together}
+
+\item{color.use}{colors for the cell clusters}
+
+\item{use.agg}{whether use aggregated data}
+
+\item{rescaling}{whether rescale each feature across all the cells}
+
+\item{names.show}{whether show the feature names}
+
+\item{size.names}{the font size of the feature names}
+}
+\description{
+generate a heatmap for the expression of differential features across different cell groups
+}