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#' simulated single cell multi-omics data. |
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#' |
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#' A dataset containing paired single-cell RNA-seq and ATAC-seq data as well as the true labels of cell groups |
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#' |
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#' @format A list contains two field data: |
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#' \describe{ |
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#' \item{data}{Simulated single-cell RNA-seq and ATAC-seq data} |
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#' \item{labels}{The true labels of cell groups} |
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#' ... |
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#' } |
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#' @source \url{https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1932-8} |
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"data_simulation" |
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#' A simulation dataset consists of five imbalanced cell clusters with five clusters in scRNA-seq data and three clusters in scATAC-seq data |
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#' |
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#' @format A list contains two field data: |
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#' \describe{ |
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#' \item{data}{Simulated single-cell RNA-seq and ATAC-seq data} |
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#' \item{labels}{The true labels of cell groups} |
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#' ... |
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#' } |
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#' @source \url{https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1932-8} |
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"data_simulation8" |
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#' single cell multi-omics data of kidney cells. |
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#' |
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#' kidney dataset containing paired single-cell RNA-seq and ATAC-seq data as well as the label information of each cell from the original paper |
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#' |
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#' @format A list contains two field data: |
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#' \describe{ |
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#' \item{data}{Single-cell RNA-seq and ATAC-seq data} |
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#' \item{labels}{The cell type information of cell groups} |
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#' ... |
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#' } |
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#' @source \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117089} |
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"data_kidney" |
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#' single cell multi-omics data of A549 cells. |
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#' |
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#' A549 dataset containing paired single-cell RNA-seq and ATAC-seq data as well as the collected time information of each cell |
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#' |
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#' @format A list contains two field data: |
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#' \describe{ |
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#' \item{data}{Single-cell RNA-seq and ATAC-seq data} |
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#' \item{labels}{The time information of cell groups} |
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#' ... |
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#' } |
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#' @source \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117089} |
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"data_A549" |
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#' single cell multi-omics data of mESC cells. |
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#' |
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#' mESC dataset containing paired single-cell RNA-seq and single-cell methylation data as well as the culture condition information of each cell |
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#' |
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#' @format A list contains two field data: |
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#' \describe{ |
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#' \item{data}{Single-cell RNA-seq and single-cell methylation data} |
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#' \item{labels}{The culture condition information of cells} |
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#' ... |
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#' } |
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#' @source \url{https://github.com/bioFAM/MOFA/blob/master/vignettes/MOFA_example_scMT.Rmd} |
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"data_mESC" |
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