--- a
+++ b/NAMESPACE
@@ -0,0 +1,124 @@
+# Generated by roxygen2: do not edit by hand
+
+export(ExpMean)
+export(LogVMR)
+export(VscAIplot)
+export(addpData)
+export(as_matrix)
+export(cellVisualization)
+export(clust2Mat)
+export(create_scAIobject)
+export(featureHeatmap)
+export(featureRankingPlot)
+export(featureScoreVisualization)
+export(featureVisualization)
+export(findNearbyLoci)
+export(getAggregatedData)
+export(getEmbeddings)
+export(identifyClusterMarkers)
+export(identifyClusters)
+export(identifyFactorMarkers)
+export(inferRegulations)
+export(lmHeatmap)
+export(preprocessing)
+export(reducedDims)
+export(reorderFeatures)
+export(runLeiden)
+export(runPCA)
+export(runUMAP)
+export(run_scAI)
+export(scAI_theme_opts)
+export(scAImodel)
+export(scPalette)
+export(searchGeneRegions)
+export(selectFeatures)
+export(selectK)
+exportClasses(scAI)
+importFrom(ComplexHeatmap,Heatmap)
+importFrom(ComplexHeatmap,HeatmapAnnotation)
+importFrom(ComplexHeatmap,draw)
+importFrom(Matrix,Matrix)
+importFrom(RColorBrewer,brewer.pal)
+importFrom(Rcpp,evalCpp)
+importFrom(Rtsne,Rtsne)
+importFrom(bedr,bedr.sort.region)
+importFrom(bedr,in.region)
+importFrom(biomaRt,getBM)
+importFrom(biomaRt,useMart)
+importFrom(circlize,colorRamp2)
+importFrom(doParallel,registerDoParallel)
+importFrom(dplyr,"%>%")
+importFrom(dplyr,slice)
+importFrom(dplyr,summarize)
+importFrom(dplyr,top_n)
+importFrom(foreach,"%dopar%")
+importFrom(foreach,foreach)
+importFrom(future,nbrOfWorkers)
+importFrom(future.apply,future_sapply)
+importFrom(ggplot2,aes)
+importFrom(ggplot2,element_blank)
+importFrom(ggplot2,element_line)
+importFrom(ggplot2,element_rect)
+importFrom(ggplot2,element_text)
+importFrom(ggplot2,facet_wrap)
+importFrom(ggplot2,geom_line)
+importFrom(ggplot2,geom_point)
+importFrom(ggplot2,ggplot)
+importFrom(ggplot2,guide_colorbar)
+importFrom(ggplot2,guide_legend)
+importFrom(ggplot2,guides)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,scale_color_distiller)
+importFrom(ggplot2,scale_color_manual)
+importFrom(ggplot2,scale_colour_gradientn)
+importFrom(ggplot2,scale_fill_manual)
+importFrom(ggplot2,scale_shape_manual)
+importFrom(ggplot2,scale_size_manual)
+importFrom(ggplot2,theme)
+importFrom(ggplot2,theme_classic)
+importFrom(ggplot2,xlab)
+importFrom(ggplot2,ylab)
+importFrom(ggrepel,geom_text_repel)
+importFrom(grDevices,colorRampPalette)
+importFrom(graphics,smoothScatter)
+importFrom(graphics,text)
+importFrom(grid,gpar)
+importFrom(grid,grid.draw)
+importFrom(grid,grid.grabExpr)
+importFrom(grid,grid.newpage)
+importFrom(grid,popViewport)
+importFrom(grid,pushViewport)
+importFrom(grid,unit)
+importFrom(grid,viewport)
+importFrom(irlba,irlba)
+importFrom(methods,as)
+importFrom(methods,new)
+importFrom(methods,setClass)
+importFrom(parallel,detectCores)
+importFrom(parallel,makeCluster)
+importFrom(parallel,makeForkCluster)
+importFrom(pbapply,pbsapply)
+importFrom(reticulate,import)
+importFrom(reticulate,py_module_available)
+importFrom(reticulate,py_set_seed)
+importFrom(reticulate,r_to_py)
+importFrom(reticulate,source_python)
+importFrom(rfunctions,crossprodcpp)
+importFrom(stats,as.dist)
+importFrom(stats,cophenetic)
+importFrom(stats,cor)
+importFrom(stats,cutree)
+importFrom(stats,dist)
+importFrom(stats,dnorm)
+importFrom(stats,hclust)
+importFrom(stats,median)
+importFrom(stats,p.adjust)
+importFrom(stats,pchisq)
+importFrom(stats,prcomp)
+importFrom(stats,rbinom)
+importFrom(stats,runif)
+importFrom(stats,sd)
+importFrom(stats,setNames)
+importFrom(stats,var)
+importFrom(stats,wilcox.test)
+useDynLib(scAI)