# Generated by roxygen2: do not edit by hand

export(ExpMean)

export(LogVMR)

export(VscAIplot)

export(addpData)

export(as_matrix)

export(cellVisualization)

export(clust2Mat)

export(create_scAIobject)

export(featureHeatmap)

export(featureRankingPlot)

export(featureScoreVisualization)

export(featureVisualization)

export(findNearbyLoci)

export(getAggregatedData)

export(getEmbeddings)

export(identifyClusterMarkers)

export(identifyClusters)

export(identifyFactorMarkers)

export(inferRegulations)

export(lmHeatmap)

export(preprocessing)

export(reducedDims)

export(reorderFeatures)

export(runLeiden)

export(runPCA)

export(runUMAP)

export(run_scAI)

export(scAI_theme_opts)

export(scAImodel)

export(scPalette)

export(searchGeneRegions)

export(selectFeatures)

export(selectK)

exportClasses(scAI)

importFrom(ComplexHeatmap,Heatmap)

importFrom(ComplexHeatmap,HeatmapAnnotation)

importFrom(ComplexHeatmap,draw)

importFrom(Matrix,Matrix)

importFrom(RColorBrewer,brewer.pal)

importFrom(Rcpp,evalCpp)

importFrom(Rtsne,Rtsne)

importFrom(bedr,bedr.sort.region)

importFrom(bedr,in.region)

importFrom(biomaRt,getBM)

importFrom(biomaRt,useMart)

importFrom(circlize,colorRamp2)

importFrom(doParallel,registerDoParallel)

importFrom(dplyr,"%>%")

importFrom(dplyr,slice)

importFrom(dplyr,summarize)

importFrom(dplyr,top_n)

importFrom(foreach,"%dopar%")

importFrom(foreach,foreach)

importFrom(future,nbrOfWorkers)

importFrom(future.apply,future_sapply)

importFrom(ggplot2,aes)

importFrom(ggplot2,element_blank)

importFrom(ggplot2,element_line)

importFrom(ggplot2,element_rect)

importFrom(ggplot2,element_text)

importFrom(ggplot2,facet_wrap)

importFrom(ggplot2,geom_line)

importFrom(ggplot2,geom_point)

importFrom(ggplot2,ggplot)

importFrom(ggplot2,guide_colorbar)

importFrom(ggplot2,guide_legend)

importFrom(ggplot2,guides)

importFrom(ggplot2,labs)

importFrom(ggplot2,scale_color_distiller)

importFrom(ggplot2,scale_color_manual)

importFrom(ggplot2,scale_colour_gradientn)

importFrom(ggplot2,scale_fill_manual)

importFrom(ggplot2,scale_shape_manual)

importFrom(ggplot2,scale_size_manual)

importFrom(ggplot2,theme)

importFrom(ggplot2,theme_classic)

importFrom(ggplot2,xlab)

importFrom(ggplot2,ylab)

importFrom(ggrepel,geom_text_repel)

importFrom(grDevices,colorRampPalette)

importFrom(graphics,smoothScatter)

importFrom(graphics,text)

importFrom(grid,gpar)

importFrom(grid,grid.draw)

importFrom(grid,grid.grabExpr)

importFrom(grid,grid.newpage)

importFrom(grid,popViewport)

importFrom(grid,pushViewport)

importFrom(grid,unit)

importFrom(grid,viewport)

importFrom(irlba,irlba)

importFrom(methods,as)

importFrom(methods,new)

importFrom(methods,setClass)

importFrom(parallel,detectCores)

importFrom(parallel,makeCluster)

importFrom(parallel,makeForkCluster)

importFrom(pbapply,pbsapply)

importFrom(reticulate,import)

importFrom(reticulate,py_module_available)

importFrom(reticulate,py_set_seed)

importFrom(reticulate,r_to_py)

importFrom(reticulate,source_python)

importFrom(rfunctions,crossprodcpp)

importFrom(stats,as.dist)

importFrom(stats,cophenetic)

importFrom(stats,cor)

importFrom(stats,cutree)

importFrom(stats,dist)

importFrom(stats,dnorm)

importFrom(stats,hclust)

importFrom(stats,median)

importFrom(stats,p.adjust)

importFrom(stats,pchisq)

importFrom(stats,prcomp)

importFrom(stats,rbinom)

importFrom(stats,runif)

importFrom(stats,sd)

importFrom(stats,setNames)

importFrom(stats,var)

importFrom(stats,wilcox.test)

useDynLib(scAI)