--- a +++ b/DESCRIPTION @@ -0,0 +1,44 @@ +Package: scAI +Type: Package +Title: integrative analysis of single-cell transcriptomic and epigenomic profiles +Version: 1.0.0 +Author: Suoqin Jin, Lihua Zhang +Maintainer: Suoqin Jin <suoqin.jin@uci.edu>, Lihua Zhang <lihuaz1@uci.edu> +Description: an unsupervised method for integrative analysis of parallel single-cell transcriptomic and epigenomic profiles. +Depends: R (>= 3.5.0) +License: GPL-3 +Encoding: UTF-8 +LazyData: true +Imports: + Rcpp, + RcppEigen, + rfunctions, + doParallel, + foreach, + reticulate, + future, + future.apply, + pbapply, + irlba, + ggplot2, + Matrix, + expm, + Rtsne, + NNLM, + swne, + dplyr, + ggrepel, + circlize, + igraph, + ComplexHeatmap, + RColorBrewer, + cowplot, + methods, + bedr, + biomaRt +Remotes: jaredhuling/rfunctions,linxihui/NNLM,yanwu2014/swne,jokergoo/ComplexHeatmap +LinkingTo: Rcpp, RcppEigen +Suggests: + rmarkdown, knitr, roxygen2 +RoxygenNote: 6.1.1 +VignetteBuilder: knitr