Package: scAI

Type: Package

Title: integrative analysis of single-cell transcriptomic and epigenomic profiles 

Version: 1.0.0

Author: Suoqin Jin, Lihua Zhang

Maintainer: Suoqin Jin <suoqin.jin@uci.edu>, Lihua Zhang <lihuaz1@uci.edu>

Description: an unsupervised method for integrative analysis of parallel single-cell transcriptomic and epigenomic profiles.

Depends: R (>= 3.5.0)

License: GPL-3

Encoding: UTF-8

LazyData: true

Imports:

    Rcpp,

    RcppEigen,

    rfunctions,

    doParallel,

    foreach,

    reticulate,

    future,

    future.apply,

    pbapply,

    irlba,

    ggplot2,

    Matrix,

    expm,

    Rtsne,

    NNLM,

    swne,

    dplyr,

    ggrepel, 

    circlize,

    igraph,

    ComplexHeatmap,

    RColorBrewer,

    cowplot,

    methods,

    bedr,

    biomaRt

Remotes: jaredhuling/rfunctions,linxihui/NNLM,yanwu2014/swne,jokergoo/ComplexHeatmap

LinkingTo: Rcpp, RcppEigen

Suggests:

    rmarkdown, knitr, roxygen2

RoxygenNote: 6.1.1

VignetteBuilder: knitr