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b/qiita_pet/templates/study_base.html |
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{% extends sitebase.html %} |
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{% block head %} |
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{% set study_title = study_info['study_title'] %} |
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{% set study_title_msg = study_title.replace('"', '\\"') %} |
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<script type="text/javascript"> |
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function validate_delete_study_text() { |
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if ($("#study-alias").val() == "{% raw study_title_msg %}") { |
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$('#delete-study-button').prop('disabled', false); |
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} else { |
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$('#delete-study-button').prop('disabled', true); |
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} |
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} |
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function delete_study() { |
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if($("#study-alias").val() != "{% raw study_title_msg %}") { |
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alert("The entered study alias doesn't match the study"); |
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return false; |
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} |
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else if(confirm("Are you sure you want to delete {% raw study_title_msg %}?")) { |
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$.post('{% raw qiita_config.portal_dir %}/study/delete/', { study_id: {{study_info['study_id']}} }) |
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.done(function ( data ) { |
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location.reload(); |
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}); |
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} |
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} |
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/** |
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* |
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* Function to populate the main div of the screen |
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* |
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* @param url string with the URL to perform the AJAX get call |
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* @param parameters the parameters for the AJAX call |
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* |
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* This function executes an AJAX get against the URL provided with the given |
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* parameters, and inserts the returned data as HTML in the study-main div |
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* |
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*/ |
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function populate_main_div(url, parameters) { |
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show_loading("study-main"); |
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$.get(url, parameters) |
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.done(function(data) { |
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$("#study-main").html(data); |
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}); |
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} |
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/** |
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* |
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* Function to populate the data-types-menu div |
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* |
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* This function executes an AJAX get against the URL |
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* "/study/description/data_type_menu/" and inserts the returned data as |
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* HTML in the data-types-menu div |
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* |
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*/ |
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function populate_data_type_menu_div() { |
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show_loading("data-types-menu"); |
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$.get("{% raw qiita_config.portal_dir %}/study/description/data_type_menu/", {study_id: {{study_info['study_id']}} }) |
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.done(function(data) { |
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$("#data-types-menu").html(data); |
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}); |
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} |
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$(document).ready(function() { |
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// Populate the different sections of the page |
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populate_data_type_menu_div(); |
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// The initial page to be shown is the base information of the study |
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{% if 'prep_id' in study_info %} |
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populate_main_div("{% raw qiita_config.portal_dir %}/study/description/prep_template/", { prep_id: {{study_info['prep_id']}}, study_id: {{study_info['study_id']}}}); |
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{% else %} |
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populate_main_div("{% raw qiita_config.portal_dir %}/study/description/baseinfo/", { study_id: {{study_info['study_id']}}}); |
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{% end %} |
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{% if study_info['num_samples'] > 0 %} |
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$("#sample-summary-btn").show(); |
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$("#add-new-preparation-btn").show(); |
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{% else %} |
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$("#sample-summary-btn").hide(); |
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$("#add-new-preparation-btn").hide(); |
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{% end %} |
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{% if study_info['message'] != '' %} |
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bootstrapAlert("{{study_info['message']}}", "{{study_info['level']}}"); |
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{% end %} |
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}); |
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</script> |
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<style> |
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.graph { |
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width:100%; |
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height:300px; |
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border: 1px solid #ccc; |
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} |
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</style> |
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{% end %} |
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{% block content %} |
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<div class="row"> |
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{% if study_info['level'] != 'info' %} |
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<div class="col-md-3"> |
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<button class="btn btn-default btn-block" onclick="populate_main_div('{% raw qiita_config.portal_dir %}/study/description/baseinfo/', { study_id: {{study_info['study_id']}} })"><span class="glyphicon glyphicon-info-sign"></span> Study Information</button> |
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<button class="btn btn-default btn-block" onclick="populate_main_div('{% raw qiita_config.portal_dir %}/study/description/sample_template/', { study_id: {{study_info['study_id']}} })"><span class="glyphicon glyphicon-info-sign"></span> Sample Information</button> |
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{% if editable %} |
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<a class="btn btn-default btn-block" href="{% raw qiita_config.portal_dir %}/study/upload/{{study_info['study_id']}}"><span class="glyphicon glyphicon-upload"></span> Upload Files</a> |
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<button class="btn btn-default btn-block" onclick="populate_main_div('{% raw qiita_config.portal_dir %}/study/new_prep_template/', { study_id: {{study_info['study_id']}} })" id="add-new-preparation-btn"><span class="glyphicon glyphicon-plus-sign"></span> Add New Preparation</button> |
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<button class="btn btn-default btn-block" onclick="populate_main_div('{% raw qiita_config.portal_dir %}/study/analyses/', { study_id: {{study_info['study_id']}} })" id="analyses-btn"><span class="glyphicon glyphicon-info-sign"></span> Derived Analyses </button> |
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{% end %} |
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{% if study_info['show_biom_download_button'] %} |
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<a class="btn btn-default btn-block" href="{% raw qiita_config.portal_dir %}/download_study_bioms/{{study_info['study_id']}}"><span class="glyphicon glyphicon-download-alt"></span> All QIIME maps and BIOMs</a> |
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{% end %} |
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{% if study_info['has_access_to_raw_data'] and study_info['show_raw_download_button'] %} |
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<a class="btn btn-default btn-block" href="{% raw qiita_config.portal_dir %}/download_raw_data/{{study_info['study_id']}}"><span class="glyphicon glyphicon-download-alt"></span> All raw data</a> |
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{% end %} |
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<div style="text-align: center;"><small><a href="{% raw qiita_config.portal_dir %}/static/doc/html/faq.html#how-to-solve-download-or-unzip-errors">Issues with downloads or opening the downloaded zip?</a></small></div> |
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<div id="data-types-menu"></div> |
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</div> |
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{% end %} |
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<div class="col-md-9"> |
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<!-- Study ID and study alias always on top --> |
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<div class="row"> |
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<div class="col-md-12" id="study-base-info"> |
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<h2>{% raw study_title %} - ID {{study_info['study_id']}}</h2> |
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<h3>{{study_info['study_alias']}}</h3> |
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<h6>Do you want to submit to <a target="_blank" href="https://www.ebi.ac.uk/ena">EBI-ENA</a>? Review the <a target="_blank" href="{% raw qiita_config.portal_dir %}/static/doc/html/checklist-for-ebi-ena-submission.html">submission checklist</a></h6> |
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</div> |
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</div> |
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<!-- Dynamic div that changes based on what information is shown --> |
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<div class="row"><div class="col-md-12" id="study-main"></div></div> |
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</div> |
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</div> |
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<!-- Modal used to delete the study --> |
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<div class="modal fade delete-study" tabindex="-1" role="dialog" id="delete-study"> |
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<div class="modal-dialog modal-md"> |
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<div class="modal-content"> |
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<div class="modal-header"> |
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<button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button> |
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<h3>Deleting:<br/></h3><h4>{% raw study_title %}</h4> |
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</div> |
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<div class="modal-body"> |
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You will only be able to delete a sandboxed study. This will delete all data associated with the study, including analyses using this data.<br/> |
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To continue you need to write the title of the study:<br/> |
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<input type="text" name="study-alias" id="study-alias" onkeyup="validate_delete_study_text();" size="{{ len(study_title) }}"> |
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<button class="btn btn-danger glyphicon glyphicon-trash" onclick="delete_study();" id="delete-study-button" disabled></button> |
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</div> |
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<div class="modal-footer"> |
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</div> |
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</div> |
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</div> |
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</div> |
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{% end %} |