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b/qiita_pet/handlers/portal.py |
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# ----------------------------------------------------------------------------- |
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# Copyright (c) 2014--, The Qiita Development Team. |
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# |
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# Distributed under the terms of the BSD 3-clause License. |
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# |
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# The full license is in the file LICENSE, distributed with this software. |
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# ----------------------------------------------------------------------------- |
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import warnings |
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from json import dumps |
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from copy import deepcopy |
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from tornado.web import authenticated, HTTPError |
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from qiita_core.util import execute_as_transaction |
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from qiita_db.study import Study |
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from qiita_db.portal import Portal |
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from qiita_db.exceptions import QiitaDBError |
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from .base_handlers import BaseHandler |
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class PortalEditBase(BaseHandler): |
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study_cols = ['study_id', 'study_title', 'study_alias'] |
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def check_admin(self): |
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if self.current_user.level != "admin": |
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raise HTTPError(403, reason="%s does not have access to portal " |
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"editing!" % self.current_user.id) |
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@execute_as_transaction |
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def get_info(self, portal="QIITA"): |
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# Add the portals and, optionally, checkbox to the information |
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studies = [s.id for s in Portal(portal).get_studies()] |
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if not studies: |
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return [] |
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study_info = Study.get_info(studies, info_cols=self.study_cols) |
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info = [] |
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for s in study_info: |
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# Make sure in correct order |
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hold = dict(s) |
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hold['portals'] = ', '.join(sorted(Study(s['study_id'])._portals)) |
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info.append(hold) |
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return info |
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class StudyPortalHandler(PortalEditBase): |
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@authenticated |
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@execute_as_transaction |
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def get(self): |
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self.check_admin() |
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info = self.get_info() |
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portals = Portal.list_portals() |
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headers = deepcopy(self.study_cols) |
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headers.insert(0, "portals") |
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self.render('portals_edit.html', headers=headers, info=info, |
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portals=portals, submit_url="/admin/portals/studies/") |
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@authenticated |
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@execute_as_transaction |
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def post(self): |
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self.check_admin() |
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portal = self.get_argument('portal') |
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studies = map(int, self.get_arguments('selected')) |
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action = self.get_argument('action') |
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try: |
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portal = Portal(portal) |
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except Exception: |
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raise HTTPError(400, reason="Not valid portal: %s" % portal) |
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try: |
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with warnings.catch_warnings(record=True) as warns: |
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if action == "Add": |
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portal.add_studies(studies) |
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elif action == "Remove": |
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portal.remove_studies(studies) |
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else: |
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raise HTTPError(400, reason="Unknown action: %s" % action) |
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except QiitaDBError as e: |
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self.write(action.upper() + " ERROR:<br/>" + str(e)) |
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return |
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msg = '; '.join([str(w.message) for w in warns]) |
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self.write(action + " completed successfully<br/>" + msg) |
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class StudyPortalAJAXHandler(PortalEditBase): |
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@authenticated |
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@execute_as_transaction |
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def get(self): |
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self.check_admin() |
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portal = self.get_argument('view-portal') |
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echo = self.get_argument('sEcho') |
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info = self.get_info(portal=portal) |
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# build the table json |
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results = { |
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"sEcho": echo, |
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"iTotalRecords": len(info), |
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"iTotalDisplayRecords": len(info), |
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"aaData": info |
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} |
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# return the json in compact form to save transmit size |
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self.write(dumps(results, separators=(',', ':'))) |