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b/qiita_db/handlers/processing_job.py |
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# ----------------------------------------------------------------------------- |
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# Copyright (c) 2014--, The Qiita Development Team. |
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# |
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# Distributed under the terms of the BSD 3-clause License. |
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# |
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# The full license is in the file LICENSE, distributed with this software. |
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# ----------------------------------------------------------------------------- |
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from json import loads |
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from tornado.web import HTTPError |
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import qiita_db as qdb |
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from .oauth2 import OauthBaseHandler, authenticate_oauth |
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def _get_job(job_id): |
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"""Returns the job with the given id if it exists |
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Parameters |
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---------- |
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job_id : str |
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The job id to check |
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Returns |
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------- |
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qiita_db.processing_job.ProcessingJob |
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The requested job |
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Raises |
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------ |
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HTTPError |
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If the job does not exist, with error code 404 |
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If there is a problem instantiating the processing job, with error |
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code 500 |
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""" |
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if not qdb.processing_job.ProcessingJob.exists(job_id): |
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raise HTTPError(404) |
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try: |
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job = qdb.processing_job.ProcessingJob(job_id) |
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except Exception as e: |
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raise HTTPError(500, reason='Error instantiating the job: %s' % str(e)) |
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return job |
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class JobHandler(OauthBaseHandler): |
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@authenticate_oauth |
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def get(self, job_id): |
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"""Get the job information |
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Parameters |
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---------- |
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job_id : str |
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The job id |
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Returns |
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------- |
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dict |
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{'command': str, |
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'parameters': dict of {str, obj}, |
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'status': str} |
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- command: the name of the command that the job executes |
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- parameters: the parameters of the command, keyed by parameter |
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name |
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- status: the status of the job |
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""" |
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with qdb.sql_connection.TRN: |
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job = _get_job(job_id) |
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cmd = job.command.name |
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params = job.parameters.values |
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status = job.status |
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msg = '' if status != 'error' else job.log.msg |
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response = {'command': cmd, 'parameters': params, |
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'status': status, 'msg': msg} |
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self.write(response) |
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class HeartbeatHandler(OauthBaseHandler): |
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@authenticate_oauth |
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def post(self, job_id): |
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"""Update the heartbeat timestamp of the job |
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Parameters |
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---------- |
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job_id : str |
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The job id |
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""" |
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with qdb.sql_connection.TRN: |
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job = _get_job(job_id) |
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try: |
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job.update_heartbeat_state() |
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except qdb.exceptions.QiitaDBOperationNotPermittedError as e: |
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raise HTTPError(403, reason=str(e)) |
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self.finish() |
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class ActiveStepHandler(OauthBaseHandler): |
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@authenticate_oauth |
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def post(self, job_id): |
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"""Changes the current execution step of the given job |
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Parameters |
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---------- |
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job_id : str |
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The job id |
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""" |
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with qdb.sql_connection.TRN: |
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job = _get_job(job_id) |
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payload = loads(self.request.body) |
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step = payload['step'] |
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try: |
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job.step = step |
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except qdb.exceptions.QiitaDBOperationNotPermittedError as e: |
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raise HTTPError(403, reason=str(e)) |
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self.finish() |
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class CompleteHandler(OauthBaseHandler): |
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@authenticate_oauth |
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def post(self, job_id): |
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"""Updates the job to one of the completed statuses: 'success', 'error' |
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Parameters |
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---------- |
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job_id : str |
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The job to complete |
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""" |
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with qdb.sql_connection.TRN: |
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job = _get_job(job_id) |
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if job.status != 'running': |
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raise HTTPError( |
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403, "Can't complete job: not in a running state") |
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qiita_plugin = qdb.software.Software.from_name_and_version( |
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'Qiita', 'alpha') |
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cmd = qiita_plugin.get_command('complete_job') |
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params = qdb.software.Parameters.load( |
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cmd, values_dict={'job_id': job_id, |
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'payload': self.request.body.decode( |
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'ascii')}) |
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# complete_job are unique so it is fine to force them to be created |
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job = qdb.processing_job.ProcessingJob.create( |
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job.user, params, force=True) |
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job.submit() |
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self.finish() |
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class ProcessingJobAPItestHandler(OauthBaseHandler): |
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@authenticate_oauth |
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def post(self): |
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user = self.get_argument('user', 'test@foo.bar') |
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s_name, s_version, cmd_name = loads(self.get_argument('command')) |
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params_dict = self.get_argument('parameters') |
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status = self.get_argument('status', None) |
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cmd = qdb.software.Software.from_name_and_version( |
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s_name, s_version).get_command(cmd_name) |
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params = qdb.software.Parameters.load(cmd, json_str=params_dict) |
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job = qdb.processing_job.ProcessingJob.create( |
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qdb.user.User(user), params, True) |
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if status: |
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job._set_status(status) |
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self.write({'job': job.id}) |