--- a
+++ b/scripts/analysis_fly.py
@@ -0,0 +1,30 @@
+import os, sys
+
+import pandas as pd
+from loguru import logger
+
+sys.path.append('..')
+
+from pyMultiOmics.constants import *
+from pyMultiOmics.mapping import Mapper
+from pyMultiOmics.common import set_log_level_info
+from pyMultiOmics.analysis import *
+from pyMultiOmics.query import *
+from pyMultiOmics.pipelines import *
+
+
+DATA_FOLDER = os.path.abspath(os.path.join('..', 'notebooks', 'test_data', 'fly_data'))
+gene_data = pd.read_csv(os.path.join(DATA_FOLDER, 'flyatlas_data.csv'), index_col='Identifier')
+gene_design = pd.read_csv(os.path.join(DATA_FOLDER, 'flyatlas_design.csv'), index_col='sample')
+
+compound_data = pd.read_csv(os.path.join(DATA_FOLDER, 'fly_metabolomics_no_dupes.csv'), index_col='Identifier')
+compound_design = pd.read_csv(os.path.join(DATA_FOLDER, 'fly_df_design.csv'), index_col='sample')
+
+set_log_level_info()
+
+m = Mapper(DROSOPHILA_MELANOGASTER, metabolic_pathway_only=True, include_related_chebi=True) \
+        .set_gene(gene_data, gene_design) \
+        .set_compound(compound_data, compound_design) \
+        .build()
+
+ap = AnalysisPipeline(m)
\ No newline at end of file