# pyMultiOmics

pyMultiOmics is a Python package for multi-omics data integration and analysis. 

It uses the Reactome database to map entities (genes, transcripts, proteins, compounds) to

their reactions and pathways. The results is then shown as a network graph. Various analyses such as

differential analysis, pathway activity analysis can be performed on this network graph, with the results 

overlaid on the graph.

### Installation

Simply run:

```

pip install pyMultiOmics

```

For PDF report generation using nbconvert, make sure to install the required dependencies:

https://nbconvert.readthedocs.io/en/latest/install.html

### Usage

[Notebooks to demonstrate various functionalities can be found here](https://github.com/glasgowcompbio/pyMultiOmics/blob/main/notebooks).