# DS_Store

.DS_Store

# Byte-compiled / optimized / DLL files

__pycache__/

*.py[cod]

*$py.class

# C extensions

*.so

# Distribution / packaging

.Python

build/

develop-eggs/

dist/

downloads/

eggs/

.eggs/

lib/

lib64/

parts/

sdist/

var/

wheels/

pip-wheel-metadata/

share/python-wheels/

*.egg-info/

.installed.cfg

*.egg

MANIFEST

# PyInstaller

#  Usually these files are written by a python script from a template

#  before PyInstaller builds the exe, so as to inject date/other infos into it.

*.manifest

*.spec

# Installer logs

pip-log.txt

pip-delete-this-directory.txt

# Unit test / coverage reports

htmlcov/

.tox/

.nox/

.coverage

.coverage.*

.cache

nosetests.xml

coverage.xml

*.cover

*.py,cover

.hypothesis/

.pytest_cache/

# Translations

*.mo

*.pot

# Django stuff:

*.log

local_settings.py

db.sqlite3

db.sqlite3-journal

# Flask stuff:

instance/

.webassets-cache

# Scrapy stuff:

.scrapy

# Sphinx documentation

docs/_build/

# PyBuilder

target/

# Jupyter Notebook

.ipynb_checkpoints

# IPython

profile_default/

ipython_config.py

# pyenv

.python-version

# pipenv

#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.

#   However, in case of collaboration, if having platform-specific dependencies or dependencies

#   having no cross-platform support, pipenv may install dependencies that don't work, or not

#   install all needed dependencies.

#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow

__pypackages__/

# Celery stuff

celerybeat-schedule

celerybeat.pid

# SageMath parsed files

*.sage.py

# Environments

.env

.venv

venv/

env.bak/

venv.bak/

# Spyder project settings

.spyderproject

.spyproject

# Rope project settings

.ropeproject

# mkdocs documentation

/site

# mypy

.mypy_cache/

.dmypy.json

dmypy.json

# Pyre type checker

.pyre/

# vscode

.vscode/settings.json

# data

data/gene_programs/*

data/spatial_omics/*

!data/gene_programs/metabolite_enzyme_sensor_gps/

# artifacts

artifacts

# charliecloud image for HPC

/env/nichecompass.tar.gz