--- a +++ b/tests/testthat/test-get_grn.R @@ -0,0 +1,38 @@ +context("get_grn") + +#' data(HeLa) +#' #' # grn only on gene +#' cluster.mRNA <- HeLa$getCluster %>% dplyr::filter(block == "mRNA") +#' X <- HeLa$raw$mRNA +#' #grn.res <- get_grn(X = HeLa$raw$mRNA, cluster = cluster.mRNA, method = "aracne") +#' +data("hmp_T2D") +cluster.mRNA <- hmp_T2D$getCluster.res %>% dplyr::filter(block == "RNA") +X <- hmp_T2D$raw$RNA + +test_that("get_grn fails on invalid input - X", { + # X + expect_error(get_grn(X = ""), "'X' must be a numeric matrix/data.frame", fixed = TRUE) + expect_error(get_grn(X = 1), "'X' must be a numeric matrix/data.frame", fixed = TRUE) + expect_error(get_grn(X = NA), "'X' must be a numeric matrix/data.frame", fixed = TRUE) + expect_error(get_grn(X = list()), "'X' must be a numeric matrix/data.frame", fixed = TRUE) + +}) + + +test_that("get_grn fails on invalid input - X", { + expect_error(get_grn(X = X, cluster = ""), "cluster must be NULL or a result from getCluster()", fixed = TRUE) +}) + +test_that("get_grn fails on invalid input - method", { + expect_error(get_grn(X = X, cluster = NULL, method = "")) +}) + +test_that("get_grn works", { + # expect_is(get_grn(X = X, cluster = cluster.mRNA, method = "aracne"), "list.igraph") + expect_warning(get_grn(X = X, cluster = cluster.mRNA, method = "aracne")) + + # expect_is(get_grn(X = X, method = "aracne"), "igraph") + expect_warning(get_grn(X = X, method = "aracne")) + +})