Switch to unified view

a b/tests/testthat/test-enrichment.R
1
context("ORA")
2
3
test_that("get_interaction_from_ORA fails on invalid imput", {
4
    query <- c("IL15", "CDHR5", "TGFA", 'C4B')
5
    expect_error(get_interaction_from_ORA(query, sources = "qowiudjh"))
6
    expect_error(get_interaction_from_ORA(query, sources = c("GO", "KEGG"))) 
7
})
8
9
test_that("get_interaction_from_ORA works ", {
10
     query <- c("IL15", "CDHR5", "TGFA", 'C4B')
11
     expect_is(get_interaction_from_ORA(query, sources = "GO"), "igraph")
12
     expect_is(get_interaction_from_ORA(query, sources = c("KEGG")), "NULL")
13
     
14
     
15
     query <- list("All" = c("IL15", "CDHR5", "TGFA", 'C4B'),
16
                   "c1" = c("IL15", "CDHR5", "TGFA"))
17
     expect_is(get_interaction_from_ORA(query, sources = "GO"), "list.igraph")
18
     query <- list(c("IL15", "CDHR5", "TGFA", 'C4B'), c("IL15", "CDHR5", "TGFA"))
19
     expect_is(get_interaction_from_ORA(query, sources = "GO"), "list.igraph")
20
     
21
})
22
23
test_that("get_ORA works", {
24
    query <- list("All" = c("IL15", "CDHR5", "TGFA", 'C4B'),
25
                  "c1" = c("IL15", "CDHR5", "TGFA"))
26
    expect_is(get_ORA(query), "data.frame")
27
    query <- c("IL15")
28
    expect_is(get_ORA(query), "data.frame")
29
})
30
31
# test_that("get_go_info works", {
32
#     expect_is(get_go_info("GO:0044216"), "data.frame")
33
# })