--- a +++ b/R/hmp_T2D.R @@ -0,0 +1,26 @@ +#' hmp_T2D +#' +#' This dataset contained a list of data.frames. +#' Raw data is a subset of the data available at: +#' https://github.com/aametwally/ipop_seasonal +#' The package will be illustrated on longitudinal MO dataset to study the +#' seasonality of MO expression in patients with diabetes +#' (see `netOmics` vignette). +#' In this subset we focused on a single individual with 7 timepoints. +#' Briefly 6 different omics were sampled (RNA, proteins, cytokines, +#' gut microbiome, metabolites and clinical variables). +#' +#' +#' @format a list of data.frame +#' \describe{ +#' \item{raw}{data.frame, raw data} +#' \item{modelled}{data.frame, modelled data} +#' \item{getCluster.res}{data.frame, clustering results from timeOmics} +#' \item{getCluster.sparse.res}{data.frame, sparse clustering results from timeOmics} +#' \item{interaction.biogrid}{data.frame, interactions from BioGRID database} +#' \item{interaction.TF}{data.frame, TFome interactions from TTrust and TF2DNA} +#' \item{medlineranker.res.df}{data.frame, medlineRanker enrichment results} +#' \item{graph.gut}{list of igraph, gut graph obtained with SparCC} +#' } +#' +"hmp_T2D" \ No newline at end of file