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b/R/hmp_T2D.R |
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#' hmp_T2D |
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#' |
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#' This dataset contained a list of data.frames. |
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#' Raw data is a subset of the data available at: |
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#' https://github.com/aametwally/ipop_seasonal |
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#' The package will be illustrated on longitudinal MO dataset to study the |
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#' seasonality of MO expression in patients with diabetes |
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#' (see `netOmics` vignette). |
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#' In this subset we focused on a single individual with 7 timepoints. |
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#' Briefly 6 different omics were sampled (RNA, proteins, cytokines, |
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#' gut microbiome, metabolites and clinical variables). |
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#' |
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#' |
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#' @format a list of data.frame |
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#' \describe{ |
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#' \item{raw}{data.frame, raw data} |
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#' \item{modelled}{data.frame, modelled data} |
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#' \item{getCluster.res}{data.frame, clustering results from timeOmics} |
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#' \item{getCluster.sparse.res}{data.frame, sparse clustering results from timeOmics} |
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#' \item{interaction.biogrid}{data.frame, interactions from BioGRID database} |
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#' \item{interaction.TF}{data.frame, TFome interactions from TTrust and TF2DNA} |
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#' \item{medlineranker.res.df}{data.frame, medlineRanker enrichment results} |
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#' \item{graph.gut}{list of igraph, gut graph obtained with SparCC} |
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#' } |
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#' |
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"hmp_T2D" |