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/NAMESPACE
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| a | b/NAMESPACE | ||
|---|---|---|---|
| 1 | # Generated by roxygen2: do not edit by hand |
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| 2 | |||
| 3 | S3method(print,RWRM_Results) |
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| 4 | export(combine_layers) |
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| 5 | export(get_graph_stats) |
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| 6 | export(get_grn) |
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| 7 | export(get_interaction_from_ORA) |
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| 8 | export(get_interaction_from_correlation) |
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| 9 | export(get_interaction_from_database) |
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| 10 | export(plot_rwr_subnetwork) |
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| 11 | export(random_walk_restart) |
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| 12 | export(rwr_find_closest_type) |
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| 13 | export(rwr_find_seeds_between_attributes) |
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| 14 | export(summary_plot_rwr_attributes) |
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| 15 | import(GO.db) |
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| 16 | import(ggplot2) |
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| 17 | importFrom(AnnotationDbi,keytypes) |
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| 18 | importFrom(Matrix,Diagonal) |
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| 19 | importFrom(Matrix,bdiag) |
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| 20 | importFrom(Matrix,colSums) |
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| 21 | importFrom(Matrix,t) |
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| 22 | importFrom(dplyr,across) |
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| 23 | importFrom(dplyr,all_of) |
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| 24 | importFrom(dplyr,everything) |
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| 25 | importFrom(dplyr,filter) |
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| 26 | importFrom(dplyr,group_by) |
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| 27 | importFrom(dplyr,left_join) |
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| 28 | importFrom(dplyr,mutate) |
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| 29 | importFrom(dplyr,n) |
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| 30 | importFrom(dplyr,pull) |
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| 31 | importFrom(dplyr,select) |
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| 32 | importFrom(dplyr,summarise) |
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| 33 | importFrom(dplyr,top_n) |
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| 34 | importFrom(gprofiler2,gconvert) |
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| 35 | importFrom(gprofiler2,gost) |
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| 36 | importFrom(igraph,E) |
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| 37 | importFrom(igraph,V) |
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| 38 | importFrom(igraph,add_vertices) |
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| 39 | importFrom(igraph,adjacent_vertices) |
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| 40 | importFrom(igraph,as.undirected) |
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| 41 | importFrom(igraph,as_adjacency_matrix) |
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| 42 | importFrom(igraph,degree) |
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| 43 | importFrom(igraph,delete_vertex_attr) |
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| 44 | importFrom(igraph,delete_vertices) |
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| 45 | importFrom(igraph,ecount) |
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| 46 | importFrom(igraph,edge_density) |
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| 47 | importFrom(igraph,graph_from_adjacency_matrix) |
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| 48 | importFrom(igraph,graph_from_biadjacency_matrix) |
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| 49 | importFrom(igraph,graph_from_data_frame) |
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| 50 | importFrom(igraph,induced_subgraph) |
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| 51 | importFrom(igraph,is_weighted) |
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| 52 | importFrom(igraph,set_vertex_attr) |
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| 53 | importFrom(igraph,simplify) |
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| 54 | importFrom(igraph,union) |
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| 55 | importFrom(igraph,vcount) |
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| 56 | importFrom(igraph,vertex_attr) |
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| 57 | importFrom(magrittr,"%>%") |
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| 58 | importFrom(methods,is) |
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| 59 | importFrom(minet,aracne) |
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| 60 | importFrom(minet,build.mim) |
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| 61 | importFrom(purrr,imap_dfr) |
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| 62 | importFrom(purrr,is_empty) |
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| 63 | importFrom(purrr,map) |
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| 64 | importFrom(purrr,map2) |
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| 65 | importFrom(purrr,map_dfr) |
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| 66 | importFrom(purrr,reduce) |
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| 67 | importFrom(purrr,set_names) |
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| 68 | importFrom(stats,cor) |
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| 69 | importFrom(stats,na.omit) |
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| 70 | importFrom(tibble,rownames_to_column) |
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| 71 | importFrom(tidyr,pivot_longer) |