--- a +++ b/DESCRIPTION @@ -0,0 +1,45 @@ +Package: netOmics +Title: Multi-Omics (time-course) network-based integration and interpretation +Version: 1.11.1 +Authors@R: + person(given = "Antoine", family = "Bodein", role = c("aut", "cre"), email = "antoine.bodein.1@ulaval.ca") +Description: netOmics is a multi-omics networks builder and explorer. + It uses a combination of network inference algorithms and and knowledge-based graphs to build multi-layered networks. + The package can be combined with timeOmics to incorporate time-course expression data and build sub-networks from multi-omics kinetic clusters. + Finally, from the generated multi-omics networks, propagation analyses allow the identification of missing biological functions (1), + multi-omics mechanisms (2) and molecules between kinetic clusters (3). This helps to resolve complex regulatory mechanisms. +License: GPL-3 +Encoding: UTF-8 +LazyData: false +Roxygen: list(markdown = TRUE) +RoxygenNote: 7.3.1 +VignetteBuilder: knitr +Depends: R (>= 4.1) +Imports: + dplyr, + ggplot2, + igraph, + magrittr, + minet, + purrr, + tibble, + tidyr, + AnnotationDbi, + GO.db, + gprofiler2, + methods, + Matrix, + stats +Suggests: + mixOmics, + timeOmics, + tidyverse, + BiocStyle, + testthat, + covr, + rmarkdown, + knitr +biocViews: GraphAndNetwork, Software, TimeCourse, WorkflowStep, SystemsBiology, NetworkInference, Network +URL: https://github.com/abodein/netOmics +BugReports: https://github.com/abodein/netOmics/issues +PackageStatus: Deprecated