48 lines (47 with data), 1.4 kB

Package: multiGSEA
Type: Package
Title: Combining GSEA-based pathway enrichment with multi omics data integration
Version: 1.17.3
Date: 2020-03-05
Authors@R: c(
    person( "Sebastian", "Canzler", email = "sebastian.canzler@ufz.de", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7935-9582")),
    person( "Jörg", "Hackermüller", email = "joerg.hackermueller@ufz.de", role = "aut", comment = c( ORCID = "0000-0003-4920-7072")))
Description: Extracted features from pathways derived from 8 different databases 
  (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or
  metabolomic level to calculate a combined GSEA-based enrichment score.
License: GPL-3
Depends: R (>= 4.0.0)
Imports: 
    magrittr,
    graphite,
    AnnotationDbi,
    metaboliteIDmapping,
    dplyr,
    fgsea,
    metap,
    rappdirs,
    rlang,
    methods
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, Pathways, Reactome, BioCarta
URL: https://github.com/yigbt/multiGSEA
BugReports: https://github.com/yigbt/multiGSEA/issues
Encoding: UTF-8
NeedsCompilation: no
RoxygenNote: 7.2.0
Suggests: 
    org.Hs.eg.db,
    org.Mm.eg.db,
    org.Rn.eg.db,
    org.Ss.eg.db,
    org.Bt.eg.db,
    org.Ce.eg.db,
    org.Dm.eg.db,
    org.Dr.eg.db,
    org.Gg.eg.db,
    org.Xl.eg.db,
    org.Cf.eg.db,
    knitr,
    rmarkdown,
    BiocStyle,
    testthat (>= 2.1.0)