% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/feature_processing.R

\name{getMappedFeatures}

\alias{getMappedFeatures}

\title{Wrapper to get feature mappings.}

\usage{

getMappedFeatures(

  pathways,

  returnID = "SYMBOL",

  organism = "hsapiens",

  which = "proteins",

  useLocal = TRUE

)

}

\arguments{

\item{pathways}{List of pathway definitions.}

\item{returnID}{String specifying the returned ID format.}

\item{organism}{String defining the organism of analysis.}

\item{which}{Mode to extract the features, either \'proteins\' or

\'metabolites\'.}

\item{useLocal}{Boolean specifying whether or not to use the local

preprocessed mapping.}

}

\value{

List of mapped features for an omics layer.

}

\description{

Feature mappings will be used from hard disk in case they have been

mapped before and `useLocal` is not set to be FALSE.

In other cases, a feature extraction will be done and the results are

stored for a following occasion.

}