--- a +++ b/inst/NEWS.Rd @@ -0,0 +1,81 @@ +\name{NEWS} +\title{News for Package \pkg{multiGSEA}} + +\section{ Changes in version 0.99.0}{ +\itemize{ + + \item Package added to Bioconductor + +}} + + +\section{ Changes in version 1.1.1 (2020-11-05)}{ + +\itemize{ + + \item Bug fix. Prevent duplicated pathway title to cause an error. + \item Include new function to enumerate duplicted pathway titles with trailing numbers. + +}} + + +\section{ Changes in version 1.1.2 (2020-11-07)}{ + +\itemize{ + + \item Speed-up the metabolite ID mapping between different ID formats + +}} + + +\section{ Changes in version 1.1.3 (2020-11-19)}{ + +\itemize{ + + \item Prevent warning due to import of two different select() functions. + +}} + + +\section{ Changes in version 1.1.4 (2020-12-09)}{ + +\itemize{ + + \item Add the correct citation of the BMC Bioinformatics article. + +}} + +\section{ Changes in version 1.1.5 (2021-04-19)}{ + +\itemize{ + + \item Typos fixed. + \item Add information and reference about metrics to calculate the feature ranks. + +}} + +\section{ Changes in version 1.1.7 (2021-05-10)}{ + +\itemize{ + + \item Remove Biocarta database from vignette - it's no longer supported by graphite R package. + \item List all available databases in error message. + +}} + +\section{ Changes in version 1.13.1 (2024-04-26)}{ + +\itemize{ + + \item Utilize by default non-adjusted single-omics p-values for aggregation into a composite p-value. Adjustment for multiple testing will be done on the combined multi-omics p-values. + \item Inlcude legacy option for p-value combination to ensure reproducibility. + +}} + +\section{ Changes in version 1.15.1 (2024-10-22)}{ + +\itemize{ + + \item Remove proteomics feature with empty identifier to prevent errors in vignette building. + +}}