Package: multiGSEA

Type: Package

Title: Combining GSEA-based pathway enrichment with multi omics data integration

Version: 1.17.3

Date: 2020-03-05

Authors@R: c(

    person( "Sebastian", "Canzler", email = "sebastian.canzler@ufz.de", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7935-9582")),

    person( "Jörg", "Hackermüller", email = "joerg.hackermueller@ufz.de", role = "aut", comment = c( ORCID = "0000-0003-4920-7072")))

Description: Extracted features from pathways derived from 8 different databases 

  (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or

  metabolomic level to calculate a combined GSEA-based enrichment score.

License: GPL-3

Depends: R (>= 4.0.0)

Imports: 

    magrittr,

    graphite,

    AnnotationDbi,

    metaboliteIDmapping,

    dplyr,

    fgsea,

    metap,

    rappdirs,

    rlang,

    methods

VignetteBuilder: knitr

biocViews: GeneSetEnrichment, Pathways, Reactome, BioCarta

URL: https://github.com/yigbt/multiGSEA

BugReports: https://github.com/yigbt/multiGSEA/issues

Encoding: UTF-8

NeedsCompilation: no

RoxygenNote: 7.2.0

Suggests: 

    org.Hs.eg.db,

    org.Mm.eg.db,

    org.Rn.eg.db,

    org.Ss.eg.db,

    org.Bt.eg.db,

    org.Ce.eg.db,

    org.Dm.eg.db,

    org.Dr.eg.db,

    org.Gg.eg.db,

    org.Xl.eg.db,

    org.Cf.eg.db,

    knitr,

    rmarkdown,

    BiocStyle,

    testthat (>= 2.1.0)