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Models:
Alyssa Salazar
AlyssaS/
mouse_organogenesis-m-om
0
Downloads: 1
[dbb3ea]: / rna / metacells / SEACell_env.yml

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# https://github.com/dpeerlab/SEACells



channels:

  - conda-forge

  - bioconda

dependencies:

  - scanpy=1.8.2

  - loompy=3.0.6

  - jupyter

  - louvain

  - python-igraph

  - louvain>=0.6,!=0.6.2

  - leidenalg

  # - harmonypy

  # - scanorama

  - seaborn

  - cython

  - pyranges

  - pip

  - pip:

    - dfply

    # - palantir

    # - PhenoGraph





# commands:

# conda create -n metacells python==3.9 --yes

# conda activate metacells

# conda install mamba --yes

# mamba env update -n metacells --file SEACell_env.yml

# pip install git+https://github.com/settylab/Palantir@removeTSNE

# python setup.py develop # inside SEACells





# mamba remove -n metacells --all