added	rna/snakemake/README.txt
added	rna/snakemake/Snakefile
added	rna/snakemake/config_ricard_babraham.yaml
added	rna/snakemake/environment.yaml
added	rna/snakemake/run_cluster.sh
added	rna_atac/gene_regulatory_networks/metacells/trajectories/build_GRN_metacells_trajectory.R
added	rna_atac/gene_regulatory_networks/metacells/trajectories/cell_oracle/celloracle_train.ipynb
added	rna_atac/gene_regulatory_networks/metacells/trajectories/plot_GRN_metacells_nmp_trajectory.R
added	rna_atac/load_rna_atac_pseudobulk.R
added	rna_atac/mofa/not_used/run.py
added	rna_atac/mofa/plot_mofa_results.R
added	rna_atac/mofa/prepare_mofa.R
added	rna_atac/mofa/run_mofa_fast.R
added	rna_atac/rna_vs_acc/metacells/TFexpr_vs_peakAcc/compare_cor_TFexpr_vs_peak_acc_pseudobulk_vs_metacell.R
added	rna_atac/rna_vs_acc/metacells/TFexpr_vs_peakAcc/plot_TFexpr_vs_peakAcc_individual_examples.R
added	rna_atac/rna_vs_acc/metacells/TFexpr_vs_peakAcc/run_cor_TFexpr_vs_peakAcc_metacells.R
added	rna_atac/rna_vs_acc/metacells/TFexpr_vs_peakAcc/trajectories/compare_cor_TFexpr_vs_peak_acc_pseudobulk_vs_metacell_trajectories.R
added	rna_atac/rna_vs_acc/metacells/gene_expr_vs_peak_acc/cor_gene_expr_vs_peak_acc_metacells.R
added	rna_atac/rna_vs_acc/metacells/gene_expr_vs_peak_acc/plot_gene_expr_vs_peak_acc_metacells.R
added	rna_atac/rna_vs_acc/metacells/gene_expr_vs_promoter_acc/cor_gene_expr_vs_promoter_acc_metacells.R
added	rna_atac/rna_vs_acc/metacells/gene_expr_vs_promoter_acc/plot_gene_expr_vs_promoter_acc_metacells.R
added	rna_atac/rna_vs_acc/pseudobulk/TFexpr_vs_peakAcc/README.txt
added	rna_atac/rna_vs_acc/pseudobulk/TFexpr_vs_peakAcc/analysis/old/TF_cobinding_analysis.R
added	rna_atac/rna_vs_acc/pseudobulk/TFexpr_vs_peakAcc/analysis/plot_TFexpr_vs_peakAcc_general_stats.R
added	rna_atac/rna_vs_acc/pseudobulk/TFexpr_vs_peakAcc/analysis/plot_TFexpr_vs_peakAcc_individual_examples.R