added	rna/plot_individual_genes/genotype/plot_individual_genes_by_genotype.R
added	rna/plot_individual_genes/pseudobulk/barplot_individual_genes_pseudobulk.R
added	rna/plot_individual_genes/pseudobulk/plot_paga_individual_genes_pseudobulk.R
added	rna/processing/1_create_seurat_rna.R
added	rna/processing/2_QC.R
added	rna/processing/3_seurat_to_SCE.R
added	rna/processing/4_doublet_detection.R
added	rna/processing/5_parse_sample_metadata_after_doublets.R
added	rna/processing/6_plot_stats.R
added	rna/processing/extract_TFs_from_SingleCellExperiment.R
added	rna/pseudobulk/old/create_pseudobulk_metadata_with_replicates.R
added	rna/pseudobulk/old/old_code.R
added	rna/pseudobulk/old/pseudobulk_rna.R
added	rna/pseudobulk/old/pseudobulk_rna_intronic_exonic.R
added	rna/pseudobulk/pseudobulk_rna.R
added	rna/pseudobulk/pseudobulk_rna_with_replicates.R
added	rna/scanpy/create_anndata_from_SingleCellExperiment.R
added	rna/scanpy/create_anndata_scvelo.py
added	rna/scanpy/dimensionality_reduction/dimensionality_reduction.py
added	rna/scanpy/scvelo/nmp_trajectory/scvelo_analysis_cells.ipynb
added	rna/scanpy/scvelo/run_scvelo.py
added	rna/scanpy/template.ipynb
added	rna/scanpy/velocyto/create_anndata_from_loom_files.py
added	rna/scanpy/velocyto/run_velocyto.sh
added	rna/scanpy/velocyto/velocyto_env.yml