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mouse_organogenesis-m-om

Downloads: 1

Commit [fe0e8b]

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [ae5712]

Child: [6c3e5b]

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added	rna/dimensionality_reduction/dimensionality_reduction_seurat.R
added	rna/dimensionality_reduction/metacells/dimensionality_reduction_sce_metacells.R
added	rna/iSEE/iSEE.R
added	rna/mapping/analysis/plot_mapping_umap.R
added	rna/mapping/analysis/plot_mapping_wt_vs_ko.R
added	rna/mapping/analysis/plot_utils.R
added	rna/mapping/run/mapping_functions.R
added	rna/mapping/run/mnn/mapping_functions.R
added	rna/mapping/run/mnn/mapping_mnn.R
added	rna/mapping/run/parse_sample_metadata_after_mapping.R
added	rna/mapping/trajectories/mapping_functions.R
added	rna/mapping/trajectories/mapping_mnn_trajectory.R
added	rna/mapping/trajectories/parse_sample_metadata_after_mapping.R
added	rna/mapping/trajectories/plot_mapping_trajectory_wt_vs_ko.R
added	rna/metacells/SEACell_env.yml
added	rna/metacells/analysis/compare_expr_umap_metacell_vs_singlecell.R
added	rna/metacells/analysis/compare_metacell_vs_singlecell_vs_pseudobulk_expr.R
added	rna/metacells/analysis/overlay_metacells_atlas_umap.R
added	rna/metacells/analysis/trajectories/overlay_metacells_atlas_trajectory.R
added	rna/metacells/analysis/trajectories/plot_trajectory_metacells.R
added	rna/metacells/run/aggregate_rna_metacell.R
added	rna/metacells/run/aggregate_rna_metacell_velocyto.R
added	rna/metacells/run/run_metacell.py
added	rna/metacells/run/run_metacell_trajectory.py
added	rna/plot_individual_genes/celltypes/plot_individual_genes_cells_metacells_pseudobulk.R

rna/dimensionality_reduction/dimensionality_reduction_seurat.R Diff Switch to side-by-side view

rna/dimensionality_reduction/metacells/dimensionality_reduction_sce_metacells.R Diff Switch to side-by-side view

rna/iSEE/iSEE.R Diff Switch to side-by-side view

rna/mapping/analysis/plot_mapping_umap.R Diff Switch to side-by-side view

rna/mapping/analysis/plot_mapping_wt_vs_ko.R Diff Switch to side-by-side view

rna/mapping/analysis/plot_utils.R Diff Switch to side-by-side view

rna/mapping/run/mapping_functions.R Diff Switch to side-by-side view

rna/mapping/run/mnn/mapping_functions.R Diff Switch to side-by-side view

rna/mapping/run/mnn/mapping_mnn.R Diff Switch to side-by-side view

rna/mapping/run/parse_sample_metadata_after_mapping.R Diff Switch to side-by-side view

rna/mapping/trajectories/mapping_functions.R Diff Switch to side-by-side view

rna/mapping/trajectories/mapping_mnn_trajectory.R Diff Switch to side-by-side view

rna/mapping/trajectories/parse_sample_metadata_after_mapping.R Diff Switch to side-by-side view

rna/mapping/trajectories/plot_mapping_trajectory_wt_vs_ko.R Diff Switch to side-by-side view

rna/metacells/SEACell_env.yml Diff Switch to side-by-side view

rna/metacells/analysis/compare_expr_umap_metacell_vs_singlecell.R Diff Switch to side-by-side view

rna/metacells/analysis/compare_metacell_vs_singlecell_vs_pseudobulk_expr.R Diff Switch to side-by-side view

rna/metacells/analysis/overlay_metacells_atlas_umap.R Diff Switch to side-by-side view

rna/metacells/analysis/trajectories/overlay_metacells_atlas_trajectory.R Diff Switch to side-by-side view

rna/metacells/analysis/trajectories/plot_trajectory_metacells.R Diff Switch to side-by-side view

rna/metacells/run/aggregate_rna_metacell.R Diff Switch to side-by-side view

rna/metacells/run/aggregate_rna_metacell_velocyto.R Diff Switch to side-by-side view

rna/metacells/run/run_metacell.py Diff Switch to side-by-side view

rna/metacells/run/run_metacell_trajectory.py Diff Switch to side-by-side view

rna/plot_individual_genes/celltypes/plot_individual_genes_cells_metacells_pseudobulk.R Diff Switch to side-by-side view

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