added	rna/TF2gene_coexpression/utils.R
added	rna/celltype_proportions/compare_celltype_proportions.R
added	rna/celltype_proportions/compare_celltype_proportions_paga.R
added	rna/celltype_proportions/plot_celltype_proportions.R
added	rna/conversions/convert_SingleCellExperiment_to_anndata.R
added	rna/conversions/convert_anndata_to_SingleCellExperiment.R
added	rna/differential/cells/differential.R
added	rna/differential/cells/parse_differential_results.R
added	rna/differential/metacells/analysis/define_marker_genes.R
added	rna/differential/metacells/differential.R
added	rna/differential/metacells/parse_differential_results.R
added	rna/differential/other/extract_TFs_diff.R
added	rna/differential/pseudobulk/celltype/analysis/define_marker_TFs.R
added	rna/differential/pseudobulk/celltype/analysis/define_marker_genes.R
added	rna/differential/pseudobulk/celltype/analysis/old/extract_TFs_diff.R
added	rna/differential/pseudobulk/celltype/analysis/old/volcano_plots_diff_rna.R
added	rna/differential/pseudobulk/celltype/analysis/plot_marker_genes_stats.R
added	rna/differential/pseudobulk/celltype/differential_celltype_pseudobulk.R
added	rna/differential/pseudobulk/celltype/old/run_diff_expr_celltype_pseudobulk.R
added	rna/differential/pseudobulk/celltype/parse_differential_results.R
added	rna/differential/pseudobulk/celltype_genotype/analysis/explore_diff_rna_genotype.R
added	rna/differential/pseudobulk/celltype_genotype/differential_celltype_genotype_pseudobulk.R
added	rna/differential/pseudobulk/celltype_genotype/parse_differential_results.R
added	rna/differential/utils.R
added	rna/dimensionality_reduction/dimensionality_reduction_sce.R