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mouse_organogenesis-m-om

Downloads: 1

Commit [fe0e8b]

Initial commit

Authored by: AlyssaS 2025-04-19

Browse code at this revision

Parent: [ae5712]

Child: [6c3e5b]

1 2 3 .. 11 > >> (Page 1 of 11)

added	.gitignore
added	README.md
added	atac/archR/add_motif_annotation/add_motif_annotation_manual.R
added	atac/archR/add_motif_annotation/archR_add_background_peaks.R
added	atac/archR/add_motif_annotation/archR_add_motif_annotation.R
added	atac/archR/add_motif_annotation/plot_motif_seqlogo.R
added	atac/archR/bigwig/README.txt
added	atac/archR/bigwig/archR_export_bw.R
added	atac/archR/celltype_assignment/archR_celltype_assignment.R
added	atac/archR/chromvar/cells/run_chromvar_from_archR.R
added	atac/archR/chromvar/pseudobulk/run_chromvar_pseudobulk.R
added	atac/archR/chromvar/utils.R
added	atac/archR/chromvar_chip/cells/run_chromvar_chip.R
added	atac/archR/chromvar_chip/metacells/differential/celltype/analysis/before_snakemake/define_markers.R
added	atac/archR/chromvar_chip/metacells/differential/celltype/analysis/compare_differential_chromvar_pseudobulk_metacells.R
added	atac/archR/chromvar_chip/metacells/differential/celltype/analysis/define_markers.R
added	atac/archR/chromvar_chip/metacells/differential/celltype/analysis/old/load_data.R
added	atac/archR/chromvar_chip/metacells/differential/celltype/analysis/plot_marker_peaks_archR.R
added	atac/archR/chromvar_chip/metacells/differential/celltype/run_diff_chromvar_chip_celltype_metacells.R
added	atac/archR/chromvar_chip/metacells/differential/differential_chromvar_metacells.R
added	atac/archR/chromvar_chip/metacells/differential/old/plot_differential_chromvar_chip_pseudobulk.R
added	atac/archR/chromvar_chip/metacells/differential/old/run_differential_chromvar_chip_pseudobulk.R
added	atac/archR/chromvar_chip/pseudobulk/compare_chromvar_chip_cells_vs_pseudobulk.R
added	atac/archR/chromvar_chip/pseudobulk/differential/celltype/analysis/define_markers.R
added	atac/archR/chromvar_chip/pseudobulk/differential/celltype/analysis/old/plot_differential_chromvar_chip_pseudobulk.R

.gitignore Diff Switch to side-by-side view

README.md Diff Switch to side-by-side view

atac/archR/add_motif_annotation/add_motif_annotation_manual.R Diff Switch to side-by-side view

atac/archR/add_motif_annotation/archR_add_background_peaks.R Diff Switch to side-by-side view

atac/archR/add_motif_annotation/archR_add_motif_annotation.R Diff Switch to side-by-side view

atac/archR/add_motif_annotation/plot_motif_seqlogo.R Diff Switch to side-by-side view

atac/archR/bigwig/README.txt Diff Switch to side-by-side view

atac/archR/bigwig/archR_export_bw.R Diff Switch to side-by-side view

atac/archR/celltype_assignment/archR_celltype_assignment.R Diff Switch to side-by-side view

atac/archR/chromvar/cells/run_chromvar_from_archR.R Diff Switch to side-by-side view

atac/archR/chromvar/pseudobulk/run_chromvar_pseudobulk.R Diff Switch to side-by-side view

atac/archR/chromvar/utils.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/cells/run_chromvar_chip.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/celltype/analysis/before_snakemake/define_markers.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/celltype/analysis/compare_differential_chromvar_pseudobulk_metacells.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/celltype/analysis/define_markers.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/celltype/analysis/old/load_data.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/celltype/analysis/plot_marker_peaks_archR.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/celltype/run_diff_chromvar_chip_celltype_metacells.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/differential_chromvar_metacells.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/old/plot_differential_chromvar_chip_pseudobulk.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/metacells/differential/old/run_differential_chromvar_chip_pseudobulk.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/pseudobulk/compare_chromvar_chip_cells_vs_pseudobulk.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/pseudobulk/differential/celltype/analysis/define_markers.R Diff Switch to side-by-side view

atac/archR/chromvar_chip/pseudobulk/differential/celltype/analysis/old/plot_differential_chromvar_chip_pseudobulk.R Diff Switch to side-by-side view

1 2 3 .. 11 > >> (Page 1 of 11)