from typing import List, Optional
import pytest
import numpy as np
import matplotlib as mpl
from anndata import AnnData
import moscot as msc
from moscot.plotting._utils import _input_to_adatas
from tests._utils import Problem
class TestMoscotPl:
def test_input_to_adatas_problem(self, adata_time: AnnData):
p = Problem(adata_time)
adata1, adata2 = _input_to_adatas(p)
assert isinstance(adata1, AnnData)
assert isinstance(adata2, AnnData)
np.testing.assert_array_equal(adata1.X.toarray(), adata_time.X.toarray())
np.testing.assert_array_equal(adata2.X.toarray(), adata_time.X.toarray())
def test_input_to_adatas_adata(self, adata_time: AnnData):
adata1, adata2 = _input_to_adatas(adata_time)
assert isinstance(adata1, AnnData)
assert isinstance(adata2, AnnData)
np.testing.assert_array_equal(adata1.X.toarray(), adata_time.X.toarray())
np.testing.assert_array_equal(adata2.X.toarray(), adata_time.X.toarray())
@pytest.mark.parametrize("return_fig", [True, False])
def test_cell_transition(self, adata_pl_cell_transition: AnnData, return_fig: bool):
fig = msc.plotting.cell_transition(adata_pl_cell_transition, return_fig=return_fig)
if return_fig:
assert fig is not None
assert isinstance(fig, mpl.figure.Figure)
else:
assert fig is None
@pytest.mark.parametrize("time_points", [None, [0]])
@pytest.mark.parametrize("return_fig", [True, False])
def test_push(self, adata_pl_push: AnnData, time_points: Optional[List[int]], return_fig: bool):
fig = msc.plotting.push(adata_pl_push, time_points=time_points, return_fig=return_fig)
if return_fig:
assert fig is not None
assert isinstance(fig, mpl.figure.Figure)
else:
assert fig is None
@pytest.mark.parametrize("time_points", [None, [0]])
@pytest.mark.parametrize("return_fig", [True, False])
def test_pull(
self,
adata_pl_pull: AnnData,
time_points: Optional[List[int]],
return_fig: bool,
):
fig = msc.plotting.pull(adata_pl_pull, time_points=time_points, return_fig=return_fig)
if return_fig:
assert fig is not None
assert isinstance(fig, mpl.figure.Figure)
else:
assert fig is None
@pytest.mark.parametrize("return_fig", [True, False])
@pytest.mark.parametrize("interpolate_color", [True, False])
def test_sankey(self, adata_pl_sankey: AnnData, return_fig: bool, interpolate_color: bool):
fig = msc.plotting.sankey(
adata_pl_sankey,
return_fig=return_fig,
interpolate_color=interpolate_color,
)
if return_fig:
assert fig is not None
assert isinstance(fig, mpl.figure.Figure)
else:
assert fig is None