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--- a +++ b/doc/_build/html/genindex.html @@ -0,0 +1,258 @@ + + +<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" + "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> + +<html xmlns="http://www.w3.org/1999/xhtml"> + <head> + <meta http-equiv="X-UA-Compatible" content="IE=Edge" /> + <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> + <title>Index — 0.1 documentation</title> + <link rel="stylesheet" href="_static/alabaster.css" type="text/css" /> + <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> + <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script> + <script type="text/javascript" src="_static/jquery.js"></script> + <script type="text/javascript" src="_static/underscore.js"></script> + <script type="text/javascript" src="_static/doctools.js"></script> + <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> + <link rel="shortcut icon" href="_static/icons8-beach-30.png"/> + <link rel="index" title="Index" href="#" /> + <link rel="search" title="Search" href="search.html" /> + + <link rel="stylesheet" href="_static/custom.css" type="text/css" /> + + + <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" /> + + </head><body> + + + <div class="document"> + <div class="documentwrapper"> + <div class="bodywrapper"> + + + <div class="body" role="main"> + + +<h1 id="index">Index</h1> + +<div class="genindex-jumpbox"> + <a href="#C"><strong>C</strong></a> + | <a href="#D"><strong>D</strong></a> + | <a href="#E"><strong>E</strong></a> + | <a href="#F"><strong>F</strong></a> + | <a href="#G"><strong>G</strong></a> + | <a href="#L"><strong>L</strong></a> + | <a href="#M"><strong>M</strong></a> + | <a href="#S"><strong>S</strong></a> + | <a href="#T"><strong>T</strong></a> + +</div> +<h2 id="C">C</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="maui.html#maui.Maui.c_index">c_index() (maui.Maui method)</a> +</li> + <li><a href="maui.html#maui.Maui.cluster">cluster() (maui.Maui method)</a> +</li> + <li><a href="maui.html#maui.Maui.compute_auc">compute_auc() (maui.Maui method)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="utils.html#maui.utils.compute_harrells_c">compute_harrells_c() (in module maui.utils)</a> +</li> + <li><a href="utils.html#maui.utils.compute_roc">compute_roc() (in module maui.utils)</a> + + <ul> + <li><a href="maui.html#maui.Maui.compute_roc">(maui.Maui method)</a> +</li> + </ul></li> + <li><a href="utils.html#maui.utils.correlate_factors_and_features">correlate_factors_and_features() (in module maui.utils)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="D">D</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="filtering-and-merging-latent-factors.html#maui.Maui.drop_unexplanatory_factors">drop_unexplanatory_factors() (in module maui.Maui)</a> + + <ul> + <li><a href="maui.html#maui.Maui.drop_unexplanatory_factors">(maui.Maui method)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="E">E</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="utils.html#maui.utils.estimate_kaplan_meier">estimate_kaplan_meier() (in module maui.utils)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="F">F</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="filtering-and-merging-latent-factors.html#maui.utils.filter_factors_by_r2">filter_factors_by_r2() (in module maui.utils)</a>, <a href="utils.html#maui.utils.filter_factors_by_r2">[1]</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="maui.html#maui.Maui.fit">fit() (maui.Maui method)</a> +</li> + <li><a href="maui.html#maui.Maui.fit_transform">fit_transform() (maui.Maui method)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="G">G</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="maui.html#maui.Maui.get_linear_weights">get_linear_weights() (maui.Maui method)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="L">L</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="saving-and-loading-models.html#maui.Maui.load">load() (in module maui.Maui)</a> + + <ul> + <li><a href="maui.html#maui.Maui.load">(maui.Maui static method)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="M">M</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="utils.html#maui.utils.map_factors_to_feaures_using_linear_models">map_factors_to_feaures_using_linear_models() (in module maui.utils)</a> +</li> + <li><a href="maui.html#maui.Maui">Maui (class in maui)</a> +</li> + <li><a href="utils.html#module-maui.utils">maui.utils (module)</a> +</li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="filtering-and-merging-latent-factors.html#maui.utils.merge_factors">merge_factors() (in module maui.utils)</a>, <a href="utils.html#maui.utils.merge_factors">[1]</a> +</li> + <li><a href="filtering-and-merging-latent-factors.html#maui.Maui.merge_similar_latent_factors">merge_similar_latent_factors() (in module maui.Maui)</a> + + <ul> + <li><a href="maui.html#maui.Maui.merge_similar_latent_factors">(maui.Maui method)</a> +</li> + </ul></li> + <li><a href="utils.html#maui.utils.multivariate_logrank_test">multivariate_logrank_test() (in module maui.utils)</a> +</li> + </ul></td> +</tr></table> + +<h2 id="S">S</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="saving-and-loading-models.html#maui.Maui.save">save() (in module maui.Maui)</a> + + <ul> + <li><a href="maui.html#maui.Maui.save">(maui.Maui method)</a> +</li> + </ul></li> + </ul></td> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="data-normalization.html#maui.utils.scale">scale() (in module maui.utils)</a>, <a href="utils.html#maui.utils.scale">[1]</a> +</li> + <li><a href="filtering-and-merging-latent-factors.html#maui.utils.select_clinical_factors">select_clinical_factors() (in module maui.utils)</a>, <a href="utils.html#maui.utils.select_clinical_factors">[1]</a> + + <ul> + <li><a href="maui.html#maui.Maui.select_clinical_factors">(maui.Maui method)</a> +</li> + </ul></li> + </ul></td> +</tr></table> + +<h2 id="T">T</h2> +<table style="width: 100%" class="indextable genindextable"><tr> + <td style="width: 33%; vertical-align: top;"><ul> + <li><a href="maui.html#maui.Maui.transform">transform() (maui.Maui method)</a> +</li> + </ul></td> +</tr></table> + + + + </div> + + </div> + </div> + <div class="sphinxsidebar" role="navigation" aria-label="main navigation"> + <div class="sphinxsidebarwrapper"> + <p class="logo"><a href="index.html"> + <img class="logo" src="_static/hex-maui.png" alt="Logo"/> + </a></p> +<h1 class="logo"><a href="index.html"></a></h1> + + + + + + + + +<h3>Navigation</h3> +<ul> +<li class="toctree-l1"><a class="reference internal" href="autoencoder-integration.html">Multi-modal Autoencoders</a></li> +<li class="toctree-l1"><a class="reference internal" href="data-normalization.html">Data and Normalization</a></li> +<li class="toctree-l1"><a class="reference internal" href="filtering-and-merging-latent-factors.html">Filtering and Merging latent factors</a></li> +<li class="toctree-l1"><a class="reference internal" href="saving-and-loading-models.html">Saving and loading models</a></li> +<li class="toctree-l1"><a class="reference internal" href="maui.html">The Maui Class</a></li> +<li class="toctree-l1"><a class="reference internal" href="utils.html">Maui Utilities</a></li> +</ul> + +<div class="relations"> +<h3>Related Topics</h3> +<ul> + <li><a href="index.html">Documentation overview</a><ul> + </ul></li> +</ul> +</div> +<div id="searchbox" style="display: none" role="search"> + <h3>Quick search</h3> + <div class="searchformwrapper"> + <form class="search" action="search.html" method="get"> + <input type="text" name="q" /> + <input type="submit" value="Go" /> + <input type="hidden" name="check_keywords" value="yes" /> + <input type="hidden" name="area" value="default" /> + </form> + </div> +</div> +<script type="text/javascript">$('#searchbox').show(0);</script> + + + + + + + + + </div> + </div> + <div class="clearer"></div> + </div> + <div class="footer"> + ©2018, Jonathan Ronen, Altuna Akalin. + + | + Powered by <a href="http://sphinx-doc.org/">Sphinx 1.8.2</a> + & <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a> + + </div> + + + + + </body> +</html> \ No newline at end of file