// Copyright (C) 2008-2022 Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth
// Copyright (C) 2022-2024 Maximilien Colange
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program.  If not, see <https://www.gnu.org/licenses/>.

// This file is based on the file 'src/utils.h' of the Bioconductor edgeR package (version 3.38.4).


#ifndef UTILS_H
#define UTILS_H
//#define DEBUG

#include <limits>
#ifdef DEBUG
#include <iostream>
#endif

#ifndef USE_FC_LEN_T
#define USE_FC_LEN_T
#endif
#ifndef FCONE
#define FCONE
#endif

#include <Python.h>
#include <numpy/arrayobject.h>

#include <algorithm>
#include <cmath>
#include <numeric>
#include <vector>
#include <sstream>
#include <stdexcept>

#include "edgepy_cpp.h"

/* Py-accessible functions are defined in file __init__.pxd */

#endif