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Models:
Alyssa Salazar
AlyssaS/
guidance-for-multi-omics
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[9271c5]: / source / teardown.sh

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#!/bin/bash



export AWS_DEFAULT_OUTPUT=text



export RESOURCE_PREFIX=${PROJECT_NAME:-GenomicsAnalysis}

export RESOURCE_PREFIX_LOWERCASE=$(echo ${RESOURCE_PREFIX} | tr '[:upper:]' '[:lower:]')



export ZONE_STACKNAME=${RESOURCE_PREFIX}-LandingZone

export PIPE_STACKNAME=${RESOURCE_PREFIX}-Pipeline

export GENE_STACKNAME=${RESOURCE_PREFIX}-Genomics

export IMG_STACKNAME=${RESOURCE_PREFIX}-Imaging

export QS_STACKNAME=${RESOURCE_PREFIX}-Quicksight

export OMICS_STACKNAME=${RESOURCE_PREFIX}-Omics

export REPOSITORY_NAME=${RESOURCE_PREFIX_LOWERCASE}



HAS_QS_STACK=$(aws cloudformation describe-stacks --stack-name ${QS_STACKNAME} && echo 1)

HAS_GENE_STACK=$(aws cloudformation describe-stacks --stack-name ${GENE_STACKNAME} && echo 1)

HAS_IMG_STACK=$(aws cloudformation describe-stacks --stack-name ${IMG_STACKNAME} && echo 1)

HAS_OMICS_STACK=$(aws cloudformation describe-stacks --stack-name ${OMICS_STACKNAME} && echo 1)

HAS_PIPE_STACK=$(aws cloudformation describe-stacks --stack-name ${PIPE_STACKNAME} && echo 1)

HAS_ZONE_STACK=$(aws cloudformation describe-stacks --stack-name ${ZONE_STACKNAME} && echo 1)



set -e



# Clear Buckets



if [[ -n $HAS_PIPE_STACK ]]; then

    BUILD_BUCKET=$(aws cloudformation describe-stacks --stack-name ${PIPE_STACKNAME} --query 'Stacks[].Outputs[?OutputKey==`BuildBucket`].OutputValue'); echo ${BUILD_BUCKET}

    RESOURCES_BUCKET=$(aws cloudformation describe-stacks --stack-name ${PIPE_STACKNAME} --query 'Stacks[].Outputs[?OutputKey==`ResourcesBucket`].OutputValue'); echo ${RESOURCES_BUCKET}

    DATALAKE_BUCKET=$(aws cloudformation describe-stacks --stack-name ${PIPE_STACKNAME} --query 'Stacks[].Outputs[?OutputKey==`DataLakeBucket`].OutputValue'); echo ${DATALAKE_BUCKET}

    LOGS_BUCKET=$(aws cloudformation describe-stacks --stack-name ${PIPE_STACKNAME} --query 'Stacks[].Outputs[?OutputKey==`LogsBucket`].OutputValue'); echo ${LOGS_BUCKET}



    [[ -n $BUILD_BUCKET ]] && aws s3 rm --recursive s3://${BUILD_BUCKET}/

    [[ -n $RESOURCES_BUCKET ]] && aws s3 rm --recursive s3://${RESOURCES_BUCKET}/

    [[ -n $DATALAKE_BUCKET ]] && aws s3 rm --recursive s3://${DATALAKE_BUCKET}/

    [[ -n $LOGS_BUCKET ]] && aws s3 rm --recursive s3://${LOGS_BUCKET}/ 

fi



# Disable Termination Protection on Stacks



[[ -n $HAS_PIPE_STACK ]] && aws cloudformation update-termination-protection --no-enable-termination-protection --stack-name ${PIPE_STACKNAME} 

[[ -n $HAS_ZONE_STACK ]] && aws cloudformation update-termination-protection --no-enable-termination-protection --stack-name ${ZONE_STACKNAME}



# Get Repo Names from Stacks



PIPE_REPO=$(aws cloudformation describe-stacks --stack-name ${ZONE_STACKNAME} --query 'Stacks[].Outputs[?OutputKey==`RepoName`].OutputValue'); echo ${PIPE_REPO}

CODE_REPO=$(aws cloudformation describe-stacks --stack-name ${PIPE_STACKNAME} --query 'Stacks[].Outputs[?OutputKey==`RepoName`].OutputValue'); echo ${CODE_REPO}



# Delete Stacks



if [[ -n $HAS_QS_STACK ]]; then

    aws cloudformation delete-stack --stack-name ${QS_STACKNAME}

    aws cloudformation wait stack-delete-complete --stack-name ${QS_STACKNAME}

fi

if [[ -n $HAS_IMG_STACK ]]; then

    aws cloudformation delete-stack --stack-name ${IMG_STACKNAME}

    aws cloudformation wait stack-delete-complete --stack-name ${IMG_STACKNAME}

fi

if [[ -n $HAS_GENE_STACK ]]; then

    aws cloudformation delete-stack --stack-name ${GENE_STACKNAME}

    aws cloudformation wait stack-delete-complete --stack-name ${GENE_STACKNAME}

fi

if [[ -n $HAS_OMICS_STACK ]]; then

    aws cloudformation delete-stack --stack-name ${OMICS_STACKNAME}

    aws cloudformation wait stack-delete-complete --stack-name ${OMICS_STACKNAME}

fi

if [[ -n $HAS_PIPE_STACK ]]; then

    aws cloudformation delete-stack --stack-name ${PIPE_STACKNAME}

    aws cloudformation wait stack-delete-complete --stack-name ${PIPE_STACKNAME}

    if [[ -n $LOGS_BUCKET ]]; then

        aws s3 rm --recursive s3://${LOGS_BUCKET}/

        sleep 1

        aws s3 rb s3://${LOGS_BUCKET}

    fi

fi

if [[ -n $HAS_ZONE_STACK ]]; then

    aws cloudformation delete-stack --stack-name ${ZONE_STACKNAME}

    aws cloudformation wait stack-delete-complete --stack-name ${ZONE_STACKNAME}

fi



# Delete Repos



[[ -n $PIPE_REPO ]] && aws codecommit delete-repository --repository-name ${PIPE_REPO}

[[ -n $CODE_REPO ]] && aws codecommit delete-repository --repository-name ${CODE_REPO}



# Cleanup Local Git Repo



find . \( -name ".git" -o -name ".gitignore" -o -name ".gitmodules" -o -name ".gitattributes" \) -exec rm -rf -- {} +