#!/bin/bash -e

export AWS_DEFAULT_OUTPUT=text

project_name=$1

# start imaging crawlers

imaging_crawlers=$(

    aws cloudformation describe-stack-resources \

        --stack-name "${project_name}-Imaging" \

        --query 'StackResources[?ResourceType==`AWS::Glue::Crawler`].PhysicalResourceId')

for img_crawler_name in ${imaging_crawlers}; do

    aws glue start-crawler --name ${img_crawler_name}

done

printf "Crawlers started successfully\n"

# start glue jobs (not needed)

#workflow_name=$(aws cloudformation describe-stacks \

#                    --stack-name "${project_name}-Imaging" \

#                    --query 'Stacks[0].Outputs[?OutputKey==`TCGAWorkflow`].OutputValue')

#

#aws glue start-workflow-run --name ${workflow_name}