--- a +++ b/source/GenomicsAnalysisCode/omicsresources_buildspec.yml @@ -0,0 +1,37 @@ +version: 0.2 +phases: + install: + runtime-versions: + python: 3.9 + build: + commands: + - | + # Declare all lambda functions + declare -a LambdaNames=("create_reference_store_lambda" "import_reference_lambda" "create_variant_store_lambda" "import_variant_lambda" "create_annotation_store_lambda" "import_annotation_lambda") + + # iterate over each lambda + for lambda in ${LambdaNames[@]}; do + + COUNT=$(aws s3 ls s3://${RESOURCES_BUCKET}/omics/"$lambda".py | wc -l) + if [ $COUNT = 0 ]; then + echo "skipping Build, ${lambda}.py not found in s3://${RESOURCES_BUCKET}/omics/" + else + echo "Building lambda zip for: ${lambda} " + mkdir tmp_${lambda} + cd tmp_${lambda} + echo "Download lambda py for: ${lambda} " + aws s3 cp s3://${RESOURCES_BUCKET}/omics/"$lambda".py . + echo "Installing pip packages" + pip3 install crhelper boto3==1.26.16 -t ./package + cd ./package + zip -r ../${lambda}.zip . + cd .. + echo "Zip lambda to artifact" + zip -g ${lambda}.zip ${lambda}.py + echo "Upload zip to s3://${RESOURCES_BUCKET}/artifacts/" + aws s3 cp ${lambda}.zip s3://${RESOURCES_BUCKET}/artifacts/ + cd .. + rm -rf tmp_${lambda} + echo "Done with ${lambda}" + fi + done \ No newline at end of file