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| a | b/source/GenomicsAnalysisCode/omics_cfn.yml | ||
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| 1 | AWSTemplateFormatVersion: 2010-09-09 |
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| 2 | |||
| 3 | Description: Omics Resources |
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| 4 | Parameters: |
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| 5 | OmicsResourcePrefix: |
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| 6 | Type: String |
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| 7 | Default: omics-cfn |
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| 8 | OmicsResourcesS3Bucket: |
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| 9 | Type: String |
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| 10 | OmicsDataS3Bucket: |
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| 11 | Type: String |
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| 12 | OmicsReferenceS3Key: |
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| 13 | Type: String |
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| 14 | Default: references/hg38/Homo_sapiens_assembly38.fasta |
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| 15 | OmicsReferenceName: |
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| 16 | Type: String |
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| 17 | Default: hg38 |
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| 18 | ClinvarS3Key: |
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| 19 | Type: String |
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| 20 | Default: annotation/vcf/clinvar/clinvar.vcf.gz |
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| 21 | SampleVcfS3Key: |
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| 22 | Type: String |
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| 23 | Default: variants/vcf/variants.vcf.gz |
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| 24 | OneKgVcfS3Key: |
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| 25 | Type: String |
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| 26 | Default: variants/1kg/ALL.chr22.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.filtNA.vcf.gz |
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| 27 | OmicsAnnotationStoreName: |
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| 28 | Type: String |
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| 29 | Default: omicsannotationstore |
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| 30 | OmicsVariantStoreName: |
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| 31 | Type: String |
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| 32 | Default: omicsvariantstore |
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| 33 | AnnotationStoreFormat: |
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| 34 | Type: String |
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| 35 | Default: 'VCF' |
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| 36 | |||
| 37 | Resources: |
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| 38 | |||
| 39 | # OMICS CREATE REFERENCE STORE |
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| 40 | OmicsReferenceStore: |
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| 41 | Type: Custom::OmicsReferenceStore |
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| 42 | DependsOn: |
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| 43 | - OmicsReferenceStoreLambda |
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| 44 | Version: 1.0 |
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| 45 | Properties: |
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| 46 | ServiceToken: !Sub ${OmicsReferenceStoreLambda.Arn} |
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| 47 | ReferenceStoreName: !Sub ${OmicsResourcePrefix}-reference-store |
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| 48 | |||
| 49 | OmicsReferenceStoreLambda: |
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| 50 | Type: AWS::Lambda::Function |
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| 51 | DependsOn: |
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| 52 | - OmicsReferenceStoreLambdaRole |
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| 53 | Properties: |
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| 54 | Handler: create_reference_store_lambda.handler |
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| 55 | Runtime: python3.9 |
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| 56 | FunctionName: !Sub ${OmicsResourcePrefix}-create-reference-store |
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| 57 | Code: |
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| 58 | S3Bucket: !Sub ${OmicsResourcesS3Bucket} |
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| 59 | S3Key: artifacts/create_reference_store_lambda.zip |
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| 60 | Role: !Sub ${OmicsReferenceStoreLambdaRole.Arn} |
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| 61 | Timeout: 60 |
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| 62 | |||
| 63 | OmicsReferenceStoreLambdaRole: |
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| 64 | Type: AWS::IAM::Role |
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| 65 | Properties: |
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| 66 | AssumeRolePolicyDocument: |
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| 67 | Version: 2012-10-17 |
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| 68 | Statement: |
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| 69 | - Action: |
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| 70 | - sts:AssumeRole |
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| 71 | Effect: Allow |
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| 72 | Principal: |
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| 73 | Service: |
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| 74 | - lambda.amazonaws.com |
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| 75 | Path: / |
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| 76 | Policies: |
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| 77 | - PolicyName: CreateReferenceStorePolicy |
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| 78 | PolicyDocument: |
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| 79 | Statement: |
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| 80 | - Effect: Allow |
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| 81 | Action: |
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| 82 | - logs:CreateLogGroup |
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| 83 | - logs:CreateLogStream |
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| 84 | - logs:PutLogEvents |
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| 85 | Resource: |
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| 86 | - !Sub arn:aws:logs:${AWS::Region}:${AWS::AccountId}:log-group:/aws/lambda/* |
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| 87 | - Effect: Allow |
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| 88 | Action: |
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| 89 | - omics:* |
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| 90 | Resource: '*' |
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| 91 | - Effect: Allow |
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| 92 | Action: |
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| 93 | - lambda:AddPermission |
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| 94 | - lambda:RemovePermission |
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| 95 | - events:PutRule |
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| 96 | - events:DeleteRule |
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| 97 | - events:PutTargets |
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| 98 | - events:RemoveTargets |
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| 99 | Resource: '*' |
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| 100 | |||
| 101 | # OMICS IMPORT REFERENCE |
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| 102 | OmicsImportReference: |
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| 103 | Type: Custom::OmicsImportReference |
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| 104 | DependsOn: |
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| 105 | - OmicsReferenceStore |
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| 106 | - OmicsImportReferenceLambda |
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| 107 | Version: 1.0 |
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| 108 | Properties: |
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| 109 | ServiceToken: !Sub ${OmicsImportReferenceLambda.Arn} |
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| 110 | ReferenceStoreId: !Sub ${OmicsReferenceStore.ReferenceStoreId} |
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| 111 | ReferenceName: !Sub ${OmicsReferenceName} |
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| 112 | OmicsImportReferenceRoleArn: !Sub ${OmicsImportReferenceJobRole.Arn} |
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| 113 | ReferenceSourceS3Uri: !Sub s3://${OmicsDataS3Bucket}/${OmicsReferenceS3Key} |
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| 114 | |||
| 115 | OmicsImportReferenceLambda: |
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| 116 | Type: AWS::Lambda::Function |
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| 117 | DependsOn: |
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| 118 | - OmicsImportReferenceLambdaRole |
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| 119 | - OmicsImportReferenceJobRole |
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| 120 | Properties: |
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| 121 | Handler: import_reference_lambda.handler |
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| 122 | Runtime: python3.9 |
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| 123 | FunctionName: !Sub ${OmicsResourcePrefix}-import-reference |
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| 124 | Code: |
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| 125 | S3Bucket: !Sub ${OmicsResourcesS3Bucket} |
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| 126 | S3Key: artifacts/import_reference_lambda.zip |
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| 127 | Role: !Sub ${OmicsImportReferenceLambdaRole.Arn} |
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| 128 | Timeout: 60 |
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| 129 | |||
| 130 | OmicsImportReferenceLambdaRole: |
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| 131 | Type: AWS::IAM::Role |
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| 132 | DependsOn: |
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| 133 | - OmicsImportReferenceJobRole |
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| 134 | Properties: |
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| 135 | AssumeRolePolicyDocument: |
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| 136 | Version: 2012-10-17 |
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| 137 | Statement: |
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| 138 | - Action: |
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| 139 | - sts:AssumeRole |
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| 140 | Effect: Allow |
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| 141 | Principal: |
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| 142 | Service: |
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| 143 | - lambda.amazonaws.com |
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| 144 | Path: / |
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| 145 | Policies: |
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| 146 | - PolicyName: ImportReferencePolicy |
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| 147 | PolicyDocument: |
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| 148 | Statement: |
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| 149 | - Effect: Allow |
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| 150 | Action: |
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| 151 | - logs:CreateLogGroup |
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| 152 | - logs:CreateLogStream |
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| 153 | - logs:PutLogEvents |
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| 154 | Resource: |
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| 155 | - !Sub arn:aws:logs:${AWS::Region}:${AWS::AccountId}:log-group:/aws/lambda/* |
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| 156 | - Effect: Allow |
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| 157 | Action: |
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| 158 | - omics:* |
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| 159 | Resource: '*' |
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| 160 | - Effect: Allow |
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| 161 | Action: |
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| 162 | - lambda:AddPermission |
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| 163 | - lambda:RemovePermission |
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| 164 | - events:PutRule |
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| 165 | - events:DeleteRule |
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| 166 | - events:PutTargets |
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| 167 | - events:RemoveTargets |
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| 168 | Resource: '*' |
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| 169 | - Effect: Allow |
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| 170 | Action: |
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| 171 | - iam:GetRole |
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| 172 | - iam:PassRole |
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| 173 | Resource: !Sub ${OmicsImportReferenceJobRole.Arn} |
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| 174 | |||
| 175 | OmicsImportReferenceJobRole: |
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| 176 | Type: AWS::IAM::Role |
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| 177 | Properties: |
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| 178 | AssumeRolePolicyDocument: |
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| 179 | Version: 2012-10-17 |
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| 180 | Statement: |
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| 181 | - Action: |
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| 182 | - sts:AssumeRole |
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| 183 | Effect: Allow |
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| 184 | Principal: |
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| 185 | Service: |
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| 186 | - omics.amazonaws.com |
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| 187 | Path: / |
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| 188 | Policies: |
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| 189 | - PolicyName: ImportReferenceJobRolePolicy |
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| 190 | PolicyDocument: |
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| 191 | Statement: |
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| 192 | - Effect: Allow |
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| 193 | Action: |
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| 194 | - s3:GetObject |
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| 195 | - s3:GetBucketLocation |
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| 196 | - s3:ListBucket |
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| 197 | Resource: |
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| 198 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket} |
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| 199 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket}/${OmicsReferenceS3Key} |
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| 200 | |||
| 201 | # OMICS CREATE VARIANT STORE |
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| 202 | OmicsVariantStore: |
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| 203 | Type: Custom::OmicsVariantStore |
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| 204 | DependsOn: |
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| 205 | - OmicsVariantStoreLambda |
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| 206 | - OmicsImportReference |
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| 207 | Version: 1.0 |
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| 208 | Properties: |
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| 209 | ServiceToken: !Sub ${OmicsVariantStoreLambda.Arn} |
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| 210 | VariantStoreName: !Sub ${OmicsVariantStoreName} |
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| 211 | ReferenceArn: !Sub ${OmicsImportReference.Arn} |
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| 212 | |||
| 213 | OmicsVariantStoreLambda: |
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| 214 | Type: AWS::Lambda::Function |
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| 215 | DependsOn: |
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| 216 | - OmicsVariantStoreLambdaRole |
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| 217 | Properties: |
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| 218 | Handler: create_variant_store_lambda.handler |
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| 219 | Runtime: python3.9 |
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| 220 | FunctionName: !Sub ${OmicsResourcePrefix}-create-variant-store |
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| 221 | Code: |
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| 222 | S3Bucket: !Sub ${OmicsResourcesS3Bucket} |
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| 223 | S3Key: artifacts/create_variant_store_lambda.zip |
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| 224 | Role: !Sub ${OmicsVariantStoreLambdaRole.Arn} |
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| 225 | Timeout: 60 |
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| 226 | |||
| 227 | OmicsVariantStoreLambdaRole: |
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| 228 | Type: AWS::IAM::Role |
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| 229 | Properties: |
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| 230 | AssumeRolePolicyDocument: |
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| 231 | Version: 2012-10-17 |
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| 232 | Statement: |
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| 233 | - Action: |
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| 234 | - sts:AssumeRole |
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| 235 | Effect: Allow |
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| 236 | Principal: |
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| 237 | Service: |
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| 238 | - lambda.amazonaws.com |
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| 239 | Path: / |
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| 240 | Policies: |
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| 241 | - PolicyName: CreateVariantStorePolicy |
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| 242 | PolicyDocument: |
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| 243 | Statement: |
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| 244 | - Effect: Allow |
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| 245 | Action: |
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| 246 | - logs:CreateLogGroup |
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| 247 | - logs:CreateLogStream |
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| 248 | - logs:PutLogEvents |
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| 249 | Resource: |
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| 250 | - !Sub arn:aws:logs:${AWS::Region}:${AWS::AccountId}:log-group:/aws/lambda/* |
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| 251 | - Effect: Allow |
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| 252 | Action: |
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| 253 | - omics:* |
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| 254 | Resource: '*' |
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| 255 | - Effect: Allow |
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| 256 | Action: |
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| 257 | - lambda:AddPermission |
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| 258 | - lambda:RemovePermission |
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| 259 | - events:PutRule |
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| 260 | - events:DeleteRule |
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| 261 | - events:PutTargets |
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| 262 | - events:RemoveTargets |
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| 263 | Resource: '*' |
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| 264 | - Effect: Allow |
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| 265 | Action: |
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| 266 | - ram:GetResourceShareInvitations |
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| 267 | - ram:AcceptResourceShareInvitation |
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| 268 | Resource: '*' |
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| 269 | |||
| 270 | # OMICS IMPORT VARIANT (sample and 1kg) JOB |
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| 271 | OmicsImportVariantOneKg: |
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| 272 | Type: Custom::OmicsImportVariantOneKg |
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| 273 | DependsOn: |
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| 274 | - OmicsVariantStore |
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| 275 | - OmicsImportVariantLambda |
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| 276 | Version: 1.0 |
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| 277 | Properties: |
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| 278 | ServiceToken: !Sub ${OmicsImportVariantLambda.Arn} |
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| 279 | VariantStoreName: !Sub ${OmicsVariantStoreName} |
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| 280 | OmicsImportVariantRoleArn: !Sub ${OmicsImportVariantJobRole.Arn} |
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| 281 | VcfS3Uri: !Sub s3://${OmicsDataS3Bucket}/${OneKgVcfS3Key} |
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| 282 | |||
| 283 | OmicsImportVariantSampleVcf: |
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| 284 | Type: Custom::OmicsImportVariantSampleVcf |
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| 285 | DependsOn: |
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| 286 | - OmicsVariantStore |
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| 287 | - OmicsImportVariantLambda |
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| 288 | Version: 1.0 |
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| 289 | Properties: |
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| 290 | ServiceToken: !Sub ${OmicsImportVariantLambda.Arn} |
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| 291 | VariantStoreName: !Sub ${OmicsVariantStoreName} |
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| 292 | OmicsImportVariantRoleArn: !Sub ${OmicsImportVariantJobRole.Arn} |
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| 293 | VcfS3Uri: !Sub s3://${OmicsDataS3Bucket}/${SampleVcfS3Key} |
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| 294 | |||
| 295 | OmicsImportVariantLambda: |
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| 296 | Type: AWS::Lambda::Function |
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| 297 | DependsOn: |
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| 298 | - OmicsImportVariantLambdaRole |
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| 299 | Properties: |
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| 300 | Handler: import_variant_lambda.handler |
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| 301 | Runtime: python3.9 |
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| 302 | FunctionName: !Sub ${OmicsResourcePrefix}-import-variant |
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| 303 | Code: |
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| 304 | S3Bucket: !Sub ${OmicsResourcesS3Bucket} |
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| 305 | S3Key: artifacts/import_variant_lambda.zip |
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| 306 | Role: !Sub ${OmicsImportVariantLambdaRole.Arn} |
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| 307 | Timeout: 60 |
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| 308 | |||
| 309 | OmicsImportVariantLambdaRole: |
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| 310 | Type: AWS::IAM::Role |
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| 311 | DependsOn: |
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| 312 | - OmicsImportVariantJobRole |
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| 313 | Properties: |
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| 314 | AssumeRolePolicyDocument: |
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| 315 | Version: 2012-10-17 |
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| 316 | Statement: |
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| 317 | - Action: |
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| 318 | - sts:AssumeRole |
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| 319 | Effect: Allow |
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| 320 | Principal: |
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| 321 | Service: |
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| 322 | - lambda.amazonaws.com |
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| 323 | Path: / |
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| 324 | Policies: |
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| 325 | - PolicyName: ImportVariantPolicy |
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| 326 | PolicyDocument: |
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| 327 | Statement: |
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| 328 | - Effect: Allow |
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| 329 | Action: |
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| 330 | - logs:CreateLogGroup |
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| 331 | - logs:CreateLogStream |
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| 332 | - logs:PutLogEvents |
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| 333 | Resource: |
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| 334 | - !Sub arn:aws:logs:${AWS::Region}:${AWS::AccountId}:log-group:/aws/lambda/* |
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| 335 | - Effect: Allow |
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| 336 | Action: |
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| 337 | - omics:* |
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| 338 | Resource: '*' |
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| 339 | - Effect: Allow |
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| 340 | Action: |
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| 341 | - lambda:AddPermission |
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| 342 | - lambda:RemovePermission |
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| 343 | - events:PutRule |
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| 344 | - events:DeleteRule |
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| 345 | - events:PutTargets |
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| 346 | - events:RemoveTargets |
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| 347 | Resource: '*' |
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| 348 | - Effect: Allow |
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| 349 | Action: |
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| 350 | - iam:GetRole |
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| 351 | - iam:PassRole |
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| 352 | Resource: !Sub ${OmicsImportVariantJobRole.Arn} |
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| 353 | |||
| 354 | OmicsImportVariantJobRole: |
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| 355 | Type: AWS::IAM::Role |
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| 356 | Properties: |
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| 357 | AssumeRolePolicyDocument: |
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| 358 | Version: 2012-10-17 |
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| 359 | Statement: |
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| 360 | - Action: |
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| 361 | - sts:AssumeRole |
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| 362 | Effect: Allow |
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| 363 | Principal: |
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| 364 | Service: |
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| 365 | - omics.amazonaws.com |
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| 366 | Path: / |
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| 367 | Policies: |
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| 368 | - PolicyName: OmicsImportVariantJobRolePolicy |
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| 369 | PolicyDocument: |
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| 370 | Statement: |
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| 371 | - Effect: Allow |
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| 372 | Action: |
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| 373 | - s3:GetObject |
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| 374 | - s3:GetBucketLocation |
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| 375 | - s3:ListBucket |
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| 376 | Resource: |
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| 377 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket} |
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| 378 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket}/${SampleVcfS3Key} |
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| 379 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket}/${OneKgVcfS3Key} |
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| 380 | - Effect: Allow |
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| 381 | Action: |
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| 382 | - omics:ListReferences |
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| 383 | - omics:GetReference |
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| 384 | - omics:GetReferenceMetadata |
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| 385 | Resource: '*' |
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| 386 | |||
| 387 | # OMICS CREATE ANNOTATION STORE |
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| 388 | OmicsAnnotationStore: |
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| 389 | Type: Custom::OmicsAnnotationStore |
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| 390 | DependsOn: |
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| 391 | - OmicsAnnotationStoreLambda |
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| 392 | - OmicsImportReference |
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| 393 | Version: 1.0 |
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| 394 | Properties: |
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| 395 | ServiceToken: !Sub ${OmicsAnnotationStoreLambda.Arn} |
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| 396 | AnnotationStoreName: !Sub ${OmicsAnnotationStoreName} |
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| 397 | ReferenceArn: !Sub ${OmicsImportReference.Arn} |
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| 398 | AnnotationStoreFormat: !Sub ${AnnotationStoreFormat} |
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| 399 | |||
| 400 | OmicsAnnotationStoreLambda: |
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| 401 | Type: AWS::Lambda::Function |
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| 402 | DependsOn: |
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| 403 | - OmicsAnnotationStoreLambdaRole |
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| 404 | Properties: |
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| 405 | Handler: create_annotation_store_lambda.handler |
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| 406 | Runtime: python3.9 |
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| 407 | FunctionName: !Sub ${OmicsResourcePrefix}-create-annotation-store-v2 |
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| 408 | Code: |
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| 409 | S3Bucket: !Sub ${OmicsResourcesS3Bucket} |
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| 410 | S3Key: artifacts/create_annotation_store_lambda.zip |
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| 411 | Role: !Sub ${OmicsAnnotationStoreLambdaRole.Arn} |
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| 412 | Timeout: 60 |
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| 413 | |||
| 414 | OmicsAnnotationStoreLambdaRole: |
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| 415 | Type: AWS::IAM::Role |
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| 416 | Properties: |
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| 417 | AssumeRolePolicyDocument: |
||
| 418 | Version: 2012-10-17 |
||
| 419 | Statement: |
||
| 420 | - Action: |
||
| 421 | - sts:AssumeRole |
||
| 422 | Effect: Allow |
||
| 423 | Principal: |
||
| 424 | Service: |
||
| 425 | - lambda.amazonaws.com |
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| 426 | Path: / |
||
| 427 | Policies: |
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| 428 | - PolicyName: CreateAnnotationPolicy |
||
| 429 | PolicyDocument: |
||
| 430 | Statement: |
||
| 431 | - Effect: Allow |
||
| 432 | Action: |
||
| 433 | - logs:CreateLogGroup |
||
| 434 | - logs:CreateLogStream |
||
| 435 | - logs:PutLogEvents |
||
| 436 | Resource: |
||
| 437 | - !Sub arn:aws:logs:${AWS::Region}:${AWS::AccountId}:log-group:/aws/lambda/* |
||
| 438 | - Effect: Allow |
||
| 439 | Action: |
||
| 440 | - omics:* |
||
| 441 | Resource: '*' |
||
| 442 | - Effect: Allow |
||
| 443 | Action: |
||
| 444 | - lambda:AddPermission |
||
| 445 | - lambda:RemovePermission |
||
| 446 | - events:PutRule |
||
| 447 | - events:DeleteRule |
||
| 448 | - events:PutTargets |
||
| 449 | - events:RemoveTargets |
||
| 450 | Resource: '*' |
||
| 451 | - Effect: Allow |
||
| 452 | Action: |
||
| 453 | - ram:GetResourceShareInvitations |
||
| 454 | - ram:AcceptResourceShareInvitation |
||
| 455 | Resource: '*' |
||
| 456 | |||
| 457 | # OMICS CREATE IMPORT ANNOTATION JOB |
||
| 458 | OmicsImportAnnotation: |
||
| 459 | Type: Custom::OmicsImportAnnotation |
||
| 460 | DependsOn: |
||
| 461 | - OmicsAnnotationStore |
||
| 462 | - OmicsImportAnnotationLambda |
||
| 463 | Version: 1.0 |
||
| 464 | Properties: |
||
| 465 | ServiceToken: !Sub ${OmicsImportAnnotationLambda.Arn} |
||
| 466 | AnnotationStoreName: !Sub ${OmicsAnnotationStoreName} |
||
| 467 | OmicsImportAnnotationRoleArn: !Sub ${OmicsImportAnnotationJobRole.Arn} |
||
| 468 | AnnotationSourceS3Uri: !Sub s3://${OmicsDataS3Bucket}/${ClinvarS3Key} |
||
| 469 | |||
| 470 | OmicsImportAnnotationLambda: |
||
| 471 | Type: AWS::Lambda::Function |
||
| 472 | DependsOn: |
||
| 473 | - OmicsImportAnnotationLambdaRole |
||
| 474 | Properties: |
||
| 475 | Handler: import_annotation_lambda.handler |
||
| 476 | Runtime: python3.9 |
||
| 477 | FunctionName: !Sub ${OmicsResourcePrefix}-import-annotation |
||
| 478 | Code: |
||
| 479 | S3Bucket: !Sub ${OmicsResourcesS3Bucket} |
||
| 480 | S3Key: artifacts/import_annotation_lambda.zip |
||
| 481 | Role: !Sub ${OmicsImportAnnotationLambdaRole.Arn} |
||
| 482 | Timeout: 60 |
||
| 483 | |||
| 484 | OmicsImportAnnotationLambdaRole: |
||
| 485 | Type: AWS::IAM::Role |
||
| 486 | DependsOn: |
||
| 487 | - OmicsImportAnnotationJobRole |
||
| 488 | Properties: |
||
| 489 | AssumeRolePolicyDocument: |
||
| 490 | Version: 2012-10-17 |
||
| 491 | Statement: |
||
| 492 | - Action: |
||
| 493 | - sts:AssumeRole |
||
| 494 | Effect: Allow |
||
| 495 | Principal: |
||
| 496 | Service: |
||
| 497 | - lambda.amazonaws.com |
||
| 498 | Path: / |
||
| 499 | Policies: |
||
| 500 | - PolicyName: ImportAnnotationPolicy |
||
| 501 | PolicyDocument: |
||
| 502 | Statement: |
||
| 503 | - Effect: Allow |
||
| 504 | Action: |
||
| 505 | - logs:CreateLogGroup |
||
| 506 | - logs:CreateLogStream |
||
| 507 | - logs:PutLogEvents |
||
| 508 | Resource: |
||
| 509 | - !Sub arn:aws:logs:${AWS::Region}:${AWS::AccountId}:log-group:/aws/lambda/* |
||
| 510 | - Effect: Allow |
||
| 511 | Action: |
||
| 512 | - omics:* |
||
| 513 | Resource: '*' |
||
| 514 | - Effect: Allow |
||
| 515 | Action: |
||
| 516 | - lambda:AddPermission |
||
| 517 | - lambda:RemovePermission |
||
| 518 | - events:PutRule |
||
| 519 | - events:DeleteRule |
||
| 520 | - events:PutTargets |
||
| 521 | - events:RemoveTargets |
||
| 522 | Resource: '*' |
||
| 523 | - Effect: Allow |
||
| 524 | Action: |
||
| 525 | - iam:GetRole |
||
| 526 | - iam:PassRole |
||
| 527 | Resource: !Sub ${OmicsImportAnnotationJobRole.Arn} |
||
| 528 | |||
| 529 | OmicsImportAnnotationJobRole: |
||
| 530 | Type: AWS::IAM::Role |
||
| 531 | Properties: |
||
| 532 | AssumeRolePolicyDocument: |
||
| 533 | Version: 2012-10-17 |
||
| 534 | Statement: |
||
| 535 | - Action: |
||
| 536 | - sts:AssumeRole |
||
| 537 | Effect: Allow |
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| 538 | Principal: |
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| 539 | Service: |
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| 540 | - omics.amazonaws.com |
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| 541 | Path: / |
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| 542 | Policies: |
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| 543 | - PolicyName: ImportAnnotationJobRolePolicy |
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| 544 | PolicyDocument: |
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| 545 | Statement: |
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| 546 | - Effect: Allow |
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| 547 | Action: |
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| 548 | - s3:GetObject |
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| 549 | - s3:GetBucketLocation |
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| 550 | - s3:ListBucket |
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| 551 | Resource: |
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| 552 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket} |
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| 553 | - !Sub arn:aws:s3:::${OmicsDataS3Bucket}/${ClinvarS3Key} |
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| 554 | - Effect: Allow |
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| 555 | Action: |
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| 556 | - omics:ListReferences |
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| 557 | - omics:GetReference |
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| 558 | - omics:GetReferenceMetadata |
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| 559 | Resource: '*' |