--- a
+++ b/paper/NAR/06_cell-cycle/mytree.txt
@@ -0,0 +1,5182 @@
+TREE_COLORS
+SEPARATOR TAB
+
+#First 3 fields define the node id, type and color
+#Possible types are:
+#'range': defines a colored range (colored background for labels/clade)
+#'clade': defines color/style for all branches in a clade
+#'branch': defines color/style for a single branch
+#'label': defines font color/style for the leaf label
+#'label_background': defines the leaf label background color
+
+#The following additional fields are required:
+#for 'range', field 4 defines the colored range label (used in the legend)
+
+#The following additional fields are optional:
+#for 'label', field 4 defines the font style ('normal',''bold', 'italic' or 'bold-italic') and field 5 defines the numeric scale factor for the font size (eg. with value 2, font size for that label will be 2x the standard size)
+#for 'clade' and 'branch', field 4 defines the branch style ('normal' or 'dashed') and field 5 defines the branch width scale factor (eg. with value 0.5, branch width for that clade will be 0.5 the standard width)
+
+DATA
+#NODE_ID TYPE COLOR LABEL_OR_STYLE SIZE_FACTOR
+ENSG00000003436	clade	#ffd500	normal
+ENSG00000004139	clade	#ffd500	normal
+ENSG00000004799	clade	#ffd500	normal
+ENSG00000004948	clade	#ffd500	normal
+ENSG00000005073	clade	#ffd500	normal
+ENSG00000005483	clade	#ffd500	normal
+ENSG00000006210	clade	#4fff00	normal
+ENSG00000006468	clade	#ffd500	normal
+ENSG00000006652	clade	#ffd500	normal
+ENSG00000006837	clade	#ff00ed	normal
+ENSG00000008083	clade	#ffd500	normal
+ENSG00000008294	clade	#ffd500	normal
+ENSG00000009724	clade	#ffd500	normal
+ENSG00000010539	clade	#ffd500	normal
+ENSG00000010671	clade	#ffd500	normal
+ENSG00000018408	clade	#ffd500	normal
+ENSG00000019549	clade	#4fff00	normal
+ENSG00000019991	clade	#ffd500	normal
+ENSG00000022355	clade	#ffd500	normal
+ENSG00000023445	clade	#ffd500	normal
+ENSG00000033100	clade	#4fff00	normal
+ENSG00000034152	clade	#ffd500	normal
+ENSG00000035115	clade	#ffd500	normal
+ENSG00000037965	clade	#ffd500	normal
+ENSG00000041982	clade	#ffd500	normal
+ENSG00000043039	clade	#ffd500	normal
+ENSG00000048052	clade	#ffd500	normal
+ENSG00000054598	clade	#ffd500	normal
+ENSG00000057468	clade	#ffd500	normal
+ENSG00000057657	clade	#ffd500	normal
+ENSG00000057704	clade	#ffd500	normal
+ENSG00000058673	clade	#ffd500	normal
+ENSG00000059769	clade	#ffd500	normal
+ENSG00000059804	clade	#ffd500	normal
+ENSG00000066422	clade	#ffd500	normal
+ENSG00000067082	clade	#ffd500	normal
+ENSG00000070444	clade	#ffd500	normal
+ENSG00000071575	clade	#ffd500	normal
+ENSG00000073614	clade	#ffd500	normal
+ENSG00000073737	clade	#ffd500	normal
+ENSG00000075426	clade	#ffd500	normal
+ENSG00000075429	clade	#ffd500	normal
+ENSG00000076248	clade	#ffd500	normal
+ENSG00000077044	clade	#ffd500	normal
+ENSG00000077585	clade	#ffd500	normal
+ENSG00000078142	clade	#ffd500	normal
+ENSG00000078237	clade	#00ff86	normal
+ENSG00000081189	clade	#ffd500	normal
+ENSG00000083093	clade	#ffd500	normal
+ENSG00000083812	clade	#4fff00	normal
+ENSG00000083817	clade	#ffd500	normal
+ENSG00000086619	clade	#ffd500	normal
+ENSG00000086696	clade	#ffd500	normal
+ENSG00000087074	clade	#ffd500	normal
+ENSG00000087494	clade	#ffd500	normal
+ENSG00000087510	clade	#ffd500	normal
+ENSG00000087589	clade	#ffd500	normal
+ENSG00000088826	clade	#ffd500	normal
+ENSG00000089116	clade	#ffd500	normal
+ENSG00000090447	clade	#ffd500	normal
+ENSG00000090776	clade	#ffd500	normal
+ENSG00000091010	clade	#4fff00	normal
+ENSG00000091409	clade	#ffd500	normal
+ENSG00000095739	clade	#ffd500	normal
+ENSG00000095951	clade	#ffd500	normal
+ENSG00000099326	clade	#ffd500	normal
+ENSG00000099954	clade	#ffd500	normal
+ENSG00000100036	clade	#ffd500	normal
+ENSG00000100068	clade	#ffd500	normal
+ENSG00000100292	clade	#ffd500	normal
+ENSG00000100297	clade	#ffd500	normal
+ENSG00000100335	clade	#ffd500	normal
+ENSG00000100483	clade	#4fff00	normal
+ENSG00000100505	clade	#ffd500	normal
+ENSG00000100739	clade	#ffd500	normal
+ENSG00000100784	clade	#00ff86	normal
+ENSG00000100906	clade	#ffd500	normal
+ENSG00000100985	clade	#ffd500	normal
+ENSG00000101096	clade	#ffd500	normal
+ENSG00000101109	clade	#ffd500	normal
+ENSG00000101384	clade	#ffd500	normal
+ENSG00000101438	clade	#ffd500	normal
+ENSG00000101654	clade	#ffd500	normal
+ENSG00000102096	clade	#4fff00	normal
+ENSG00000102554	clade	#ffd500	normal
+ENSG00000102804	clade	#ffd500	normal
+ENSG00000103056	clade	#ffd500	normal
+ENSG00000103855	clade	#ffd500	normal
+ENSG00000104419	clade	#ffd500	normal
+ENSG00000104691	clade	#ffd500	normal
+ENSG00000104951	clade	#ffd500	normal
+ENSG00000105204	clade	#ffd500	normal
+ENSG00000105516	clade	#009eff	normal
+ENSG00000105708	clade	#ffd500	normal
+ENSG00000105732	clade	#ffd500	normal
+ENSG00000105856	clade	#ffd500	normal
+ENSG00000106080	clade	#ffd500	normal
+ENSG00000107159	clade	#ffd500	normal
+ENSG00000107338	clade	#ffd500	normal
+ENSG00000107485	clade	#ffd500	normal
+ENSG00000107731	clade	#ffd500	normal
+ENSG00000107859	clade	#ffd500	normal
+ENSG00000108001	clade	#ffd500	normal
+ENSG00000108175	clade	#ffd500	normal
+ENSG00000108306	clade	#ffd500	normal
+ENSG00000109133	clade	#ffd500	normal
+ENSG00000109321	clade	#ffd500	normal
+ENSG00000109670	clade	#ffd500	normal
+ENSG00000109851	clade	#ffd500	normal
+ENSG00000110060	clade	#ffd500	normal
+ENSG00000110841	clade	#ffd500	normal
+ENSG00000110848	clade	#ffd500	normal
+ENSG00000110852	clade	#ffd500	normal
+ENSG00000111262	clade	#ffd500	normal
+ENSG00000111696	clade	#4fff00	normal
+ENSG00000111837	clade	#ffd500	normal
+ENSG00000111877	clade	#ffd500	normal
+ENSG00000112175	clade	#ffd500	normal
+ENSG00000112245	clade	#ffd500	normal
+ENSG00000112297	clade	#ffd500	normal
+ENSG00000112299	clade	#ffd500	normal
+ENSG00000112365	clade	#ffd500	normal
+ENSG00000112773	clade	#ffd500	normal
+ENSG00000113163	clade	#ffd500	normal
+ENSG00000113369	clade	#ffd500	normal
+ENSG00000113580	clade	#ffd500	normal
+ENSG00000113742	clade	#ffd500	normal
+ENSG00000113916	clade	#ffd500	normal
+ENSG00000114423	clade	#ffd500	normal
+ENSG00000114739	clade	#ffd500	normal
+ENSG00000114796	clade	#ffd500	normal
+ENSG00000115008	clade	#ffd500	normal
+ENSG00000115461	clade	#ffd500	normal
+ENSG00000115738	clade	#ff00ed	normal
+ENSG00000115963	clade	#3700ff	normal
+ENSG00000116285	clade	#ffd500	normal
+ENSG00000116604	clade	#ffd500	normal
+ENSG00000116717	clade	#ffd500	normal
+ENSG00000116819	clade	#ffd500	normal
+ENSG00000117318	clade	#ffd500	normal
+ENSG00000117586	clade	#ffd500	normal
+ENSG00000117597	clade	#ffd500	normal
+ENSG00000117707	clade	#00ff86	normal
+ENSG00000117877	clade	#ffd500	normal
+ENSG00000118503	clade	#ffd500	normal
+ENSG00000118514	clade	#ffd500	normal
+ENSG00000118515	clade	#ffd500	normal
+ENSG00000118985	clade	#ffd500	normal
+ENSG00000118997	clade	#ffd500	normal
+ENSG00000119042	clade	#ffd500	normal
+ENSG00000119138	clade	#ffd500	normal
+ENSG00000119508	clade	#ffd500	normal
+ENSG00000119669	clade	#ffd500	normal
+ENSG00000119737	clade	#ffd500	normal
+ENSG00000119866	clade	#ffd500	normal
+ENSG00000119938	clade	#ffd500	normal
+ENSG00000119953	clade	#ffd500	normal
+ENSG00000119986	clade	#ffd500	normal
+ENSG00000120071	clade	#00ff86	normal
+ENSG00000120158	clade	#ffd500	normal
+ENSG00000120690	clade	#ffd500	normal
+ENSG00000120833	clade	#ffd500	normal
+ENSG00000120875	clade	#ffd500	normal
+ENSG00000120889	clade	#ffd500	normal
+ENSG00000120942	clade	#4fff00	normal
+ENSG00000121406	clade	#ffd500	normal
+ENSG00000122641	clade	#ffd500	normal
+ENSG00000122877	clade	#ffd500	normal
+ENSG00000123095	clade	#ffd500	normal
+ENSG00000123358	clade	#ffd500	normal
+ENSG00000124145	clade	#ffd500	normal
+ENSG00000124171	clade	#ffd500	normal
+ENSG00000124217	clade	#ffd500	normal
+ENSG00000124635	clade	#ffd500	normal
+ENSG00000124659	clade	#ffd500	normal
+ENSG00000124713	clade	#ffd500	normal
+ENSG00000124743	clade	#ffd500	normal
+ENSG00000124789	clade	#ffd500	normal
+ENSG00000124875	clade	#ffd500	normal
+ENSG00000124882	clade	#ffd500	normal
+ENSG00000125398	clade	#ffd500	normal
+ENSG00000125538	clade	#ffd500	normal
+ENSG00000125740	clade	#ffd500	normal
+ENSG00000125772	clade	#ffd500	normal
+ENSG00000125798	clade	#ffd500	normal
+ENSG00000125845	clade	#ffd500	normal
+ENSG00000125952	clade	#ffd500	normal
+ENSG00000125968	clade	#ffd500	normal
+ENSG00000126368	clade	#ffd500	normal
+ENSG00000126391	clade	#ffd500	normal
+ENSG00000126550	clade	#ffd500	normal
+ENSG00000126759	clade	#ffd500	normal
+ENSG00000127152	clade	#ffd500	normal
+ENSG00000127311	clade	#ffd500	normal
+ENSG00000127334	clade	#ffd500	normal
+ENSG00000128342	clade	#ffd500	normal
+ENSG00000128564	clade	#ffd500	normal
+ENSG00000128591	clade	#ffd500	normal
+ENSG00000128594	clade	#ffd500	normal
+ENSG00000129315	clade	#ffd500	normal
+ENSG00000129654	clade	#ffd500	normal
+ENSG00000130054	clade	#ffd500	normal
+ENSG00000130066	clade	#4fff00	normal
+ENSG00000130203	clade	#ffd500	normal
+ENSG00000130489	clade	#ffd500	normal
+ENSG00000130544	clade	#ffd500	normal
+ENSG00000130711	clade	#ffd500	normal
+ENSG00000130749	clade	#ffd500	normal
+ENSG00000131016	clade	#ffd500	normal
+ENSG00000131080	clade	#ffd500	normal
+ENSG00000131759	clade	#ffd500	normal
+ENSG00000132326	clade	#ffd500	normal
+ENSG00000132464	clade	#4fff00	normal
+ENSG00000132467	clade	#ffd500	normal
+ENSG00000132510	clade	#ffd500	normal
+ENSG00000132661	clade	#ffd500	normal
+ENSG00000132669	clade	#ffd500	normal
+ENSG00000132872	clade	#ffd500	normal
+ENSG00000133059	clade	#ffd500	normal
+ENSG00000133124	clade	#ffd500	normal
+ENSG00000133639	clade	#ffd500	normal
+ENSG00000134107	clade	#ffd500	normal
+ENSG00000134531	clade	#ffd500	normal
+ENSG00000134954	clade	#ffd500	normal
+ENSG00000134987	clade	#ffd500	normal
+ENSG00000135111	clade	#ffd500	normal
+ENSG00000135241	clade	#ffd500	normal
+ENSG00000135373	clade	#4fff00	normal
+ENSG00000135625	clade	#ffd500	normal
+ENSG00000135899	clade	#ffd500	normal
+ENSG00000135913	clade	#4fff00	normal
+ENSG00000135974	clade	#ffd500	normal
+ENSG00000136158	clade	#ffd500	normal
+ENSG00000136634	clade	#ffd500	normal
+ENSG00000136866	clade	#ffd500	normal
+ENSG00000136869	clade	#4fff00	normal
+ENSG00000136881	clade	#ffd500	normal
+ENSG00000136997	clade	#ffd500	normal
+ENSG00000137040	clade	#ffd500	normal
+ENSG00000137331	clade	#ffd500	normal
+ENSG00000137449	clade	#ffd500	normal
+ENSG00000137494	clade	#ffd500	normal
+ENSG00000137558	clade	#ffd500	normal
+ENSG00000137745	clade	#ffd500	normal
+ENSG00000138166	clade	#ffd500	normal
+ENSG00000138271	clade	#ffd500	normal
+ENSG00000138386	clade	#ffd500	normal
+ENSG00000139146	clade	#ffd500	normal
+ENSG00000139289	clade	#ffd500	normal
+ENSG00000139438	clade	#ffd500	normal
+ENSG00000139549	clade	#ffd500	normal
+ENSG00000139668	clade	#00ff86	normal
+ENSG00000139832	clade	#ffd500	normal
+ENSG00000139874	clade	#ffd500	normal
+ENSG00000139890	clade	#ffd500	normal
+ENSG00000139946	clade	#ffd500	normal
+ENSG00000140030	clade	#ffd500	normal
+ENSG00000140332	clade	#ffd500	normal
+ENSG00000140450	clade	#ffd500	normal
+ENSG00000140543	clade	#ff00ed	normal
+ENSG00000140691	clade	#ffd500	normal
+ENSG00000140905	clade	#ff00ed	normal
+ENSG00000140941	clade	#4fff00	normal
+ENSG00000141337	clade	#ffd500	normal
+ENSG00000141384	clade	#ffd500	normal
+ENSG00000141682	clade	#ffd500	normal
+ENSG00000142396	clade	#ffd500	normal
+ENSG00000142867	clade	#ffd500	normal
+ENSG00000143067	clade	#ffd500	normal
+ENSG00000143190	clade	#00ff86	normal
+ENSG00000143199	clade	#ffd500	normal
+ENSG00000143322	clade	#ffd500	normal
+ENSG00000143333	clade	#ffd500	normal
+ENSG00000143479	clade	#00ff86	normal
+ENSG00000143507	clade	#ffd500	normal
+ENSG00000143614	clade	#ffd500	normal
+ENSG00000143842	clade	#ffd500	normal
+ENSG00000143867	clade	#ffd500	normal
+ENSG00000144136	clade	#ffd500	normal
+ENSG00000144550	clade	#ffd500	normal
+ENSG00000144560	clade	#ffd500	normal
+ENSG00000144655	clade	#ffd500	normal
+ENSG00000145107	clade	#ffd500	normal
+ENSG00000145390	clade	#ffd500	normal
+ENSG00000145632	clade	#ffd500	normal
+ENSG00000145817	clade	#4fff00	normal
+ENSG00000145911	clade	#ffd500	normal
+ENSG00000146242	clade	#4fff00	normal
+ENSG00000147050	clade	#ffd500	normal
+ENSG00000147117	clade	#ffd500	normal
+ENSG00000147509	clade	#ffd500	normal
+ENSG00000147883	clade	#ffd500	normal
+ENSG00000148737	clade	#ffd500	normal
+ENSG00000148841	clade	#ffd500	normal
+ENSG00000148842	clade	#ffd500	normal
+ENSG00000148926	clade	#ffd500	normal
+ENSG00000149054	clade	#4fff00	normal
+ENSG00000149798	clade	#ffd500	normal
+ENSG00000149948	clade	#ffd500	normal
+ENSG00000149968	clade	#ffd500	normal
+ENSG00000150347	clade	#ffd500	normal
+ENSG00000150630	clade	#ffd500	normal
+ENSG00000150783	clade	#ffd500	normal
+ENSG00000150907	clade	#ffd500	normal
+ENSG00000150991	clade	#ffd500	normal
+ENSG00000151014	clade	#ffd500	normal
+ENSG00000151131	clade	#ffd500	normal
+ENSG00000151612	clade	#ffd500	normal
+ENSG00000151883	clade	#ffd500	normal
+ENSG00000151952	clade	#4fff00	normal
+ENSG00000152409	clade	#ffd500	normal
+ENSG00000152454	clade	#ffd500	normal
+ENSG00000152661	clade	#ffd500	normal
+ENSG00000152684	clade	#ffd500	normal
+ENSG00000152939	clade	#009eff	normal
+ENSG00000153234	clade	#ffd500	normal
+ENSG00000153443	clade	#ffd500	normal
+ENSG00000153721	clade	#ffd500	normal
+ENSG00000153922	clade	#ffd500	normal
+ENSG00000154479	clade	#ffd500	normal
+ENSG00000155265	clade	#ffd500	normal
+ENSG00000155846	clade	#ffd500	normal
+ENSG00000156273	clade	#ffd500	normal
+ENSG00000156804	clade	#ffd500	normal
+ENSG00000157502	clade	#ffd500	normal
+ENSG00000157540	clade	#ffd500	normal
+ENSG00000157933	clade	#ffd500	normal
+ENSG00000158050	clade	#ffd500	normal
+ENSG00000158161	clade	#ffd500	normal
+ENSG00000158373	clade	#ffd500	normal
+ENSG00000158406	clade	#ffd500	normal
+ENSG00000158615	clade	#ffd500	normal
+ENSG00000160199	clade	#ffd500	normal
+ENSG00000160679	clade	#ffd500	normal
+ENSG00000160712	clade	#ffd500	normal
+ENSG00000160888	clade	#ffd500	normal
+ENSG00000160908	clade	#ffd500	normal
+ENSG00000161960	clade	#ff00ed	normal
+ENSG00000162367	clade	#ffd500	normal
+ENSG00000162407	clade	#ffd500	normal
+ENSG00000162413	clade	#ffd500	normal
+ENSG00000162650	clade	#ffd500	normal
+ENSG00000162695	clade	#4fff00	normal
+ENSG00000162711	clade	#ffd500	normal
+ENSG00000162775	clade	#ffd500	normal
+ENSG00000162783	clade	#4fff00	normal
+ENSG00000162924	clade	#009eff	normal
+ENSG00000162951	clade	#ffd500	normal
+ENSG00000163092	clade	#ffd500	normal
+ENSG00000163216	clade	#ffd500	normal
+ENSG00000163376	clade	#ffd500	normal
+ENSG00000163399	clade	#ffd500	normal
+ENSG00000163492	clade	#ffd500	normal
+ENSG00000163513	clade	#ffd500	normal
+ENSG00000163536	clade	#ffd500	normal
+ENSG00000163545	clade	#ffd500	normal
+ENSG00000163577	clade	#ffd500	normal
+ENSG00000163638	clade	#ffd500	normal
+ENSG00000163661	clade	#ffd500	normal
+ENSG00000163734	clade	#ffd500	normal
+ENSG00000163735	clade	#ffd500	normal
+ENSG00000163806	clade	#00ff86	normal
+ENSG00000163823	clade	#ffd500	normal
+ENSG00000163874	clade	#ffd500	normal
+ENSG00000163877	clade	#ffd500	normal
+ENSG00000163960	clade	#ffd500	normal
+ENSG00000163961	clade	#ffd500	normal
+ENSG00000164076	clade	#ffd500	normal
+ENSG00000164080	clade	#ffd500	normal
+ENSG00000164086	clade	#ffd500	normal
+ENSG00000164116	clade	#ffd500	normal
+ENSG00000164128	clade	#ffd500	normal
+ENSG00000164318	clade	#ffd500	normal
+ENSG00000164442	clade	#ffd500	normal
+ENSG00000164463	clade	#ffd500	normal
+ENSG00000164626	clade	#ffd500	normal
+ENSG00000164631	clade	#ffd500	normal
+ENSG00000164647	clade	#ffd500	normal
+ENSG00000164683	clade	#009eff	normal
+ENSG00000164776	clade	#ffd500	normal
+ENSG00000164794	clade	#ffd500	normal
+ENSG00000164849	clade	#ffd500	normal
+ENSG00000164949	clade	#ffd500	normal
+ENSG00000164951	clade	#ffd500	normal
+ENSG00000165029	clade	#ffd500	normal
+ENSG00000165312	clade	#ffd500	normal
+ENSG00000165355	clade	#ffd500	normal
+ENSG00000165507	clade	#ffd500	normal
+ENSG00000165527	clade	#ffd500	normal
+ENSG00000165572	clade	#ffd500	normal
+ENSG00000165606	clade	#ffd500	normal
+ENSG00000165702	clade	#ffd500	normal
+ENSG00000165794	clade	#4fff00	normal
+ENSG00000165813	clade	#ffd500	normal
+ENSG00000166133	clade	#ffd500	normal
+ENSG00000166170	clade	#ffd500	normal
+ENSG00000166394	clade	#ffd500	normal
+ENSG00000166450	clade	#ffd500	normal
+ENSG00000166529	clade	#ffd500	normal
+ENSG00000166670	clade	#ffd500	normal
+ENSG00000166819	clade	#ffd500	normal
+ENSG00000166839	clade	#ffd500	normal
+ENSG00000166886	clade	#ffd500	normal
+ENSG00000167011	clade	#ffd500	normal
+ENSG00000167034	clade	#ffd500	normal
+ENSG00000167074	clade	#ffd500	normal
+ENSG00000167173	clade	#ffd500	normal
+ENSG00000167377	clade	#ffd500	normal
+ENSG00000167384	clade	#ffd500	normal
+ENSG00000167470	clade	#ffd500	normal
+ENSG00000167981	clade	#ffd500	normal
+ENSG00000168143	clade	#ffd500	normal
+ENSG00000168264	clade	#ffd500	normal
+ENSG00000168298	clade	#ffd500	normal
+ENSG00000168404	clade	#ffd500	normal
+ENSG00000168679	clade	#ffd500	normal
+ENSG00000168772	clade	#ffd500	normal
+ENSG00000168806	clade	#ffd500	normal
+ENSG00000168811	clade	#009eff	normal
+ENSG00000169242	clade	#ffd500	normal
+ENSG00000169252	clade	#ffd500	normal
+ENSG00000169297	clade	#ffd500	normal
+ENSG00000169306	clade	#ffd500	normal
+ENSG00000169429	clade	#ffd500	normal
+ENSG00000169548	clade	#ffd500	normal
+ENSG00000169550	clade	#ffd500	normal
+ENSG00000169908	clade	#ffd500	normal
+ENSG00000169981	clade	#ffd500	normal
+ENSG00000170100	clade	#ffd500	normal
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