Commit [d01132] main

Initial commit

AlyssaS AlyssaS 2025-04-19

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added bin/convert_to_adata.py
added bin/csv_to_seurat.R
added bin/entropy.py
added bin/evaluate_bulk_rna_concordance.py
added bin/gene_activity.py
added bin/match_closest_cell.py
added bin/merge_h5.py
added bin/mtx_to_adata.py
added bin/plot_pca.py
added bin/plot_rna_clustering.py
added bin/plot_rna_scatter.py
added bin/plot_var_vs_acc.py
added bin/predict_model.py
added bin/predict_protein.py
added bin/train_model.py
added bin/train_protein_predictor.py
added data/10x/atac_v1_pbmc_10k_filtered_peak_bc_matrix.h5
added data/10x/pbmc_atac_obs_metadata.csv
added data/Homo_sapiens.GRCh37.87.gtf.gz
added data/Homo_sapiens.GRCh38.100.gtf.gz
added data/Mus_musculus.GRCm38.98.chr.gtf.gz
added data/Mus_musculus.NCBIM37.67.gtf.gz
added data/bcc/bcc_cluster_to_celltype.json
added data/gencode.vM7.annotation.gtf.gz
added data/hg19ToHg38.over.chain.gz
bin/convert_to_adata.py Diff Switch to side-by-side view
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bin/csv_to_seurat.R Diff Switch to side-by-side view
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bin/entropy.py Diff Switch to side-by-side view
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bin/evaluate_bulk_rna_concordance.py Diff Switch to side-by-side view
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bin/gene_activity.py Diff Switch to side-by-side view
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bin/match_closest_cell.py Diff Switch to side-by-side view
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bin/merge_h5.py Diff Switch to side-by-side view
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bin/mtx_to_adata.py Diff Switch to side-by-side view
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bin/plot_pca.py Diff Switch to side-by-side view
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bin/plot_rna_clustering.py Diff Switch to side-by-side view
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bin/plot_rna_scatter.py Diff Switch to side-by-side view
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bin/plot_var_vs_acc.py Diff Switch to side-by-side view
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bin/predict_model.py Diff Switch to side-by-side view
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bin/predict_protein.py Diff Switch to side-by-side view
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bin/train_model.py Diff Switch to side-by-side view
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bin/train_protein_predictor.py Diff Switch to side-by-side view
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data/10x/pbmc_atac_obs_metadata.csv Diff Switch to side-by-side view
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data/Homo_sapiens.GRCh37.87.gtf.gz
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data/Homo_sapiens.GRCh38.100.gtf.gz
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data/Mus_musculus.NCBIM37.67.gtf.gz
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data/bcc/bcc_cluster_to_celltype.json Diff Switch to side-by-side view
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data/gencode.vM7.annotation.gtf.gz
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data/hg19ToHg38.over.chain.gz
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