--- a +++ b/environment.yml @@ -0,0 +1,199 @@ +name: babel +channels: + - pytorch + - anaconda + - conda-forge + - bioconda + - defaults +dependencies: + - _libgcc_mutex=0.1=conda_forge + - _openmp_mutex=4.5=1_llvm + - absl-py=0.10.0=py37_0 + - adjusttext=0.7.3.1=py_1 + - anndata=0.6.22.post1=py_0 + - argon2-cffi=20.1.0=py37h7b6447c_1 + - astropy=4.0.1.post1=py37h8f50634_0 + - async_generator=1.10=py37h28b3542_0 + - attrs=20.2.0=py_0 + - backcall=0.2.0=py_0 + - blas=2.17=openblas + - bleach=3.2.1=py_0 + - blosc=1.19.0=hd408876_0 + - brotlipy=0.7.0=py37h7b6447c_1000 + - bzip2=1.0.8=h7b6447c_0 + - c-ares=1.16.1=h7b6447c_0 + - ca-certificates=2020.10.14=0 + - cached-property=1.5.2=py_0 + - cairo=1.14.12=h8948797_3 + - captum=0.2.0=0 + - certifi=2020.6.20=py37_0 + - cffi=1.14.3=py37he30daa8_0 + - chardet=3.0.4=py37_1003 + - cryptography=3.1.1=py37h1ba5d50_0 + - cudatoolkit=10.1.243=h6bb024c_0 + - cycler=0.10.0=py37_0 + - dbus=1.13.18=hb2f20db_0 + - decorator=4.4.2=py_0 + - defusedxml=0.6.0=py_0 + - entrypoints=0.3=py37_0 + - expat=2.2.10=he6710b0_2 + - fast-histogram=0.9=py37heb32a55_0 + - filelock=3.0.12=py_0 + - fontconfig=2.13.1=hba837de_1005 + - freetype=2.10.4=h5ab3b9f_0 + - gdown=4.0.2=pyhd8ed1ab_0 + - glib=2.56.2=hd408876_0 + - gmp=6.1.2=hb3b607b_0 + - grpcio=1.31.0=py37hf8bcb03_0 + - gst-plugins-base=1.14.0=hbbd80ab_1 + - gstreamer=1.14.0=hb453b48_1 + - h5py=2.10.0=py37h7918eee_0 + - hdf5=1.10.4=hb1b8bf9_0 + - icu=58.2=he6710b0_3 + - idna=2.10=py_0 + - igraph=0.7.1=h2166141_1005 + - importlib-metadata=2.0.0=py_1 + - importlib_metadata=2.0.0=1 + - intel-openmp=2020.2=254 + - intervaltree=3.0.2=py_0 + - ipykernel=5.3.4=py37h5ca1d4c_0 + - ipython=7.18.1=py37h5ca1d4c_0 + - ipython_genutils=0.2.0=py37_0 + - ipywidgets=7.5.1=py_1 + - jedi=0.17.2=py37_0 + - jinja2=2.11.2=py_0 + - joblib=0.17.0=py_0 + - jpeg=9b=habf39ab_1 + - jsonschema=3.2.0=py_2 + - jupyter=1.0.0=py37h89c1867_7 + - jupyter_client=6.1.7=py_0 + - jupyter_console=6.2.0=py_0 + - jupyter_core=4.6.3=py37_0 + - jupyterlab_pygments=0.1.2=py_0 + - kiwisolver=1.2.0=py37hfd86e86_0 + - lcms2=2.11=h396b838_0 + - ld_impl_linux-64=2.33.1=h53a641e_7 + - leidenalg=0.7.0=py37h3340039_2 + - libblas=3.8.0=17_openblas + - libcblas=3.8.0=17_openblas + - libedit=3.1.20191231=h14c3975_1 + - libffi=3.3=he6710b0_2 + - libgcc-ng=11.2.0=h1d223b6_11 + - libgfortran-ng=7.3.0=hdf63c60_0 + - libiconv=1.15=h63c8f33_5 + - liblapack=3.8.0=17_openblas + - liblapacke=3.8.0=17_openblas + - libllvm10=10.0.1=hbcb73fb_5 + - libopenblas=0.3.10=h5a2b251_0 + - libpng=1.6.37=hbc83047_0 + - libprotobuf=3.13.0.1=hd408876_0 + - libsodium=1.0.18=h7b6447c_0 + - libstdcxx-ng=11.2.0=he4da1e4_11 + - libtiff=4.1.0=h2733197_1 + - libuuid=2.32.1=h7f98852_1000 + - libxcb=1.14=h7b6447c_0 + - libxml2=2.9.10=hb55368b_3 + - llvm-openmp=12.0.1=h4bd325d_1 + - llvmlite=0.34.0=py37h269e1b5_4 + - louvain=0.6.1=py37he1b5a44_2 + - lz4-c=1.9.2=heb0550a_3 + - lzo=2.10=h7b6447c_2 + - markdown=3.3.2=py37_0 + - markupsafe=1.1.1=py37h14c3975_1 + - matplotlib=3.3.1=0 + - matplotlib-base=3.3.1=py37h817c723_0 + - mistune=0.8.4=py37h14c3975_1001 + - mkl=2020.2=256 + - mock=4.0.2=py_0 + - mpl-scatter-density=0.7=py_0 + - multicore-tsne=0.1_d4ff4aab=py37hda21425_1 + - mysql-connector-c=6.1.11=h597af5e_1 + - natsort=7.0.1=py_0 + - nbclient=0.5.1=py_0 + - nbconvert=6.0.7=py37_0 + - nbformat=5.0.8=py_0 + - ncurses=6.2=he6710b0_1 + - nest-asyncio=1.4.1=py_0 + - networkx=2.5=py_0 + - ninja=1.10.1=py37hfd86e86_0 + - notebook=6.1.4=py37_0 + - numba=0.51.2=py37h04863e7_1 + - numexpr=2.7.1=py37h7ea95a0_0 + - numpy=1.17.5=py37haa41c4c_1 + - olefile=0.46=py37_0 + - openssl=1.1.1h=h7b6447c_0 + - packaging=20.4=py_0 + - pandas=0.25.3=py37he6710b0_0 + - pandoc=2.11=hb0f4dca_0 + - pandocfilters=1.4.2=py37_1 + - parso=0.7.0=py_0 + - patsy=0.5.1=py37_0 + - pcre=8.44=he6710b0_0 + - pexpect=4.8.0=py37_1 + - pickleshare=0.7.5=py37_1001 + - pillow=8.0.0=py37h9a89aac_0 + - pip=20.2.4=py37_0 + - pixman=0.40.0=h7b6447c_0 + - prometheus_client=0.8.0=py_0 + - prompt-toolkit=3.0.8=py_0 + - prompt_toolkit=3.0.8=0 + - protobuf=3.13.0.1=py37he6710b0_1 + - ptyprocess=0.6.0=py37_0 + - pycairo=1.19.1=py37h2a1e443_0 + - pycparser=2.20=py_2 + - pygments=2.7.1=py_0 + - pyopenssl=19.1.0=py_1 + - pyparsing=2.4.7=py_0 + - pyqt=5.9.2=py37h22d08a2_1 + - pyrsistent=0.17.3=py37h7b6447c_0 + - pysocks=1.7.1=py37_1 + - pytables=3.6.1=py37h71ec239_0 + - python=3.7.9=h7579374_0 + - python-dateutil=2.8.1=py_0 + - python-igraph=0.7.1.post7=py37h516909a_0 + - python_abi=3.7=2_cp37m + - pytorch=1.3.1=py3.7_cuda10.1.243_cudnn7.6.3_0 + - pytz=2020.1=py_0 + - pyzmq=19.0.2=py37he6710b0_1 + - qt=5.9.7=h5867ecd_1 + - qtconsole=4.7.7=py_0 + - qtpy=1.9.0=py_0 + - readline=8.0=h7b6447c_0 + - requests=2.24.0=py_0 + - scanpy=1.4.4.post1=py_0 + - scikit-learn=0.21.3=py37h22eb022_0 + - scipy=1.3.2=py37he2b7bc3_0 + - seaborn=0.11.0=py_0 + - send2trash=1.5.0=py37_0 + - setuptools=50.3.0=py37hb0f4dca_1 + - sip=4.19.24=py37he6710b0_0 + - six=1.15.0=py_0 + - skorch=0.7.0=pyh5ca1d4c_0 + - snappy=1.1.8=he6710b0_0 + - sortedcontainers=2.2.2=py_0 + - sqlite=3.33.0=h62c20be_0 + - statsmodels=0.10.1=py37hdd07704_0 + - tabulate=0.8.7=py37_0 + - tbb=2020.3=hfd86e86_0 + - tensorboard=2.0.0=pyhb38c66f_1 + - terminado=0.9.1=py37_0 + - testpath=0.4.4=py_0 + - tk=8.6.10=hbc83047_0 + - torchvision=0.4.2=py37_cu101 + - tornado=6.0.4=py37h7b6447c_1 + - tqdm=4.50.2=py_0 + - traitlets=5.0.5=py_0 + - ucsc-liftover=357=h446ed27_4 + - umap-learn=0.3.10=py37_1 + - urllib3=1.25.11=py_0 + - wcwidth=0.2.5=py_0 + - webencodings=0.5.1=py37_1 + - werkzeug=1.0.1=py_0 + - wheel=0.35.1=py_0 + - widgetsnbextension=3.5.1=py37_0 + - xz=5.2.5=h7b6447c_0 + - zeromq=4.3.3=he6710b0_3 + - zipp=3.3.1=py_0 + - zlib=1.2.11=h7b6447c_3 + - zstd=1.4.4=h0b5b093_3 +prefix: /home/wukevin/miniconda3/envs/babel