101 lines (100 with data), 2.6 kB

Package: VoltRon
Type: Package
Title: VoltRon for Spatial Omics Data Integration and Analysis
Version: 0.2.0
Depends: R (>= 4.3.0)
Author@R: 
	person("Artür", "Manukyan", 
		     role=c("aut", "cre"),
	       email="artur-man@hotmail.com", 
	       comment=c(ORCID="0000-0002-0441-9517")),
	person("Ella", "Bahry", 
		     role=c("aut")),
	person("Raj Prateek", "Rai", 
		     role=c("aut")),
	person("Wei-che", "Ko", 
		     role=c("aut")),
	person("Markus", "Landthaler", 
		     role=c("aut")),
	person("Altuna", "Akalin", 
		     role=c("aut"))
Author: Artür Manukyan, Ella Bahry, Raj Prateek Rai, Wei-Che Ko, Markus Landthaler, Altuna Akalin
Maintainer: Artür Manukyan <artur-man@hotmail.com>
Description: VoltRon is a spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is capable of analyzing multiple types and modalities of spatially-aware datasets. VoltRon visualizes and analyzes regions of interests (ROIs), spots, cells, molecules and event tiles.
License: MIT + file LICENSE
SystemRequirements: OpenCV 4.8 (or higher): libopencv-dev (Debian, Ubuntu) or opencv-devel (Fedora)
Encoding: UTF-8
RoxygenNote: 7.3.2
biocViews:
Imports: methods, grDevices, data.table, Matrix, S4Arrays, ids, RcppAnnoy, 
         RANN, igraph, dplyr, ggplot2, ggrepel, ggpubr, rjson, magick, 
         EBImage, sp, rlang, shiny, shinyjs, stringr, irlba, uwot, RCDT
LinkingTo: Rcpp, RcppArmadillo (>= 0.4)
Collate: 
    'RcppExports.R'
    'zzz.R'
    'allgenerics.R'
    'allclasses.R'
    'annotation.R'
    'assay.R'
    'auxiliary.R'
    'clustering.R'
    'conversion.R'
    'data.R'
    'deconvolution.R'
    'differentialexpression.R'
    'image.R'
    'import.R'
    'integration.R'
    'interactive.R'
    'io.R'
    'metadata.R'
    'objects.R'
    'processing.R'
    'registration.R'
    'sample.R'
    'spatial.R'
    'visualization.R'
Suggests:
    testthat (>= 3.0.0),
    S4Vectors,
    DelayedArray,
    rhdf5,
    basilisk,
    reticulate,
    RBioFormats,
    BPCells,
    HDF5Array,
    pizzarr,
    ZarrArray,
    HDF5DataFrame,
    ZarrDataFrame,
    ImageArray,
    viridisLite,
    SpatialExperiment,
    SingleCellExperiment,
    SummarizedExperiment,
    Seurat,
    SeuratObject,
    Giotto,
    DESeq2,
    MuSiC,
    spacexr,
    XML,
    ComplexHeatmap,
    xlsx,
    reshape2,
    tiledb,
    tiledbsc,
    arrow,
    vitessceR,
    geojsonR,
    circlize,
    rstudioapi,
    ggforce,
    ggnewscale,
    anndataR,
    anndata,
Config/testthat/edition: 3
LazyData: true
LazyDataCompression: gzip