--- a +++ b/man/vrViolinPlot.Rd @@ -0,0 +1,41 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/visualization.R +\name{vrViolinPlot} +\alias{vrViolinPlot} +\title{vrViolinPlot} +\usage{ +vrViolinPlot( + object, + features = NULL, + assay = NULL, + group.by = "Sample", + norm = TRUE, + pt.size = 0.5, + plot.points = TRUE, + ncol = 2, + nrow = NULL +) +} +\arguments{ +\item{object}{a VoltRon object} + +\item{features}{a set of features to be visualized, either from \link{vrFeatures} of raw or normalized data or columns of the \link{Metadata}.} + +\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. +if NULL, the default assay will be used, see \link{vrMainAssay}.} + +\item{group.by}{a column of metadata from \link{Metadata} used as grouping label for the spatial entities} + +\item{norm}{if TRUE, the normalized data is used} + +\item{pt.size}{point size} + +\item{plot.points}{if TRUE, measures are visualized as points as well.} + +\item{ncol}{column wise number of plots, for \link{ggarrange}} + +\item{nrow}{row wise number of plots, for \link{ggarrange}} +} +\description{ +vrViolinPlot +}