|
a |
|
b/man/vrSpatialPoints.Rd |
|
|
1 |
% Generated by roxygen2: do not edit by hand |
|
|
2 |
% Please edit documentation in R/allgenerics.R, R/objects.R, R/metadata.R, |
|
|
3 |
% R/assay.R, R/image.R, R/sample.R |
|
|
4 |
\name{vrSpatialPoints} |
|
|
5 |
\alias{vrSpatialPoints} |
|
|
6 |
\alias{vrSpatialPoints,VoltRon-method} |
|
|
7 |
\alias{vrSpatialPoints,vrMetadata-method} |
|
|
8 |
\alias{vrSpatialPoints,vrAssay-method} |
|
|
9 |
\alias{vrSpatialPoints,vrAssayV2-method} |
|
|
10 |
\alias{vrSpatialPoints,vrImage-method} |
|
|
11 |
\alias{vrSpatialPoints,vrSpatial-method} |
|
|
12 |
\alias{vrSpatialPoints,vrSample-method} |
|
|
13 |
\alias{vrSpatialPoints,vrBlock-method} |
|
|
14 |
\alias{vrSpatialPoints,vrLayer-method} |
|
|
15 |
\alias{vrSpatialPoints<-,vrAssay-method} |
|
|
16 |
\alias{vrSpatialPoints<-,vrAssayV2-method} |
|
|
17 |
\alias{vrSpatialPoints<-,vrImage-method} |
|
|
18 |
\alias{vrSpatialPoints<-,vrSpatial-method} |
|
|
19 |
\alias{vrSpatialPoints<-} |
|
|
20 |
\title{vrSpatialPoints} |
|
|
21 |
\usage{ |
|
|
22 |
vrSpatialPoints(object, ...) |
|
|
23 |
|
|
|
24 |
\S4method{vrSpatialPoints}{VoltRon}(object, assay = NULL) |
|
|
25 |
|
|
|
26 |
\S4method{vrSpatialPoints}{vrMetadata}(object, assay = NULL) |
|
|
27 |
|
|
|
28 |
\S4method{vrSpatialPoints}{vrAssay}(object) |
|
|
29 |
|
|
|
30 |
\S4method{vrSpatialPoints}{vrAssayV2}(object) |
|
|
31 |
|
|
|
32 |
\S4method{vrSpatialPoints}{vrImage}(object) |
|
|
33 |
|
|
|
34 |
\S4method{vrSpatialPoints}{vrSpatial}(object) |
|
|
35 |
|
|
|
36 |
\S4method{vrSpatialPoints}{vrSample}(object) |
|
|
37 |
|
|
|
38 |
\S4method{vrSpatialPoints}{vrBlock}(object) |
|
|
39 |
|
|
|
40 |
\S4method{vrSpatialPoints}{vrLayer}(object) |
|
|
41 |
|
|
|
42 |
\S4method{vrSpatialPoints}{vrAssay}(object) <- value |
|
|
43 |
|
|
|
44 |
\S4method{vrSpatialPoints}{vrAssayV2}(object) <- value |
|
|
45 |
|
|
|
46 |
\S4method{vrSpatialPoints}{vrImage}(object) <- value |
|
|
47 |
|
|
|
48 |
\S4method{vrSpatialPoints}{vrSpatial}(object) <- value |
|
|
49 |
|
|
|
50 |
vrSpatialPoints(object, ...) <- value |
|
|
51 |
} |
|
|
52 |
\arguments{ |
|
|
53 |
\item{object}{a VoltRon, vrSample, vrLayer, vrAssay or vrSpatial object.} |
|
|
54 |
|
|
|
55 |
\item{...}{arguments passed to other methods.} |
|
|
56 |
|
|
|
57 |
\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. |
|
|
58 |
if NULL, the default assay will be used, see \link{vrMainAssay}.} |
|
|
59 |
|
|
|
60 |
\item{value}{names for spatial points} |
|
|
61 |
} |
|
|
62 |
\description{ |
|
|
63 |
Get and set spatial entities. |
|
|
64 |
} |
|
|
65 |
\examples{ |
|
|
66 |
vrSpatialPoints(visium_data) |
|
|
67 |
vrSpatialPoints(visium_data, assay = "Visium") |
|
|
68 |
vrSpatialPoints(visium_data, assay = "Assay1") |
|
|
69 |
} |