--- a
+++ b/man/vrScatterPlot.Rd
@@ -0,0 +1,44 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/visualization.R
+\name{vrScatterPlot}
+\alias{vrScatterPlot}
+\title{vrScatterPlot}
+\usage{
+vrScatterPlot(
+  object,
+  feature.1,
+  feature.2,
+  norm = TRUE,
+  assay = NULL,
+  pt.size = 2,
+  font.size = 2,
+  group.by = "label",
+  label = FALSE,
+  trend = FALSE
+)
+}
+\arguments{
+\item{object}{a VoltRon object}
+
+\item{feature.1}{first feature}
+
+\item{feature.2}{second feature}
+
+\item{norm}{if TRUE, the normalize data will be used}
+
+\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. 
+if NULL, the default assay will be used, see \link{vrMainAssay}.}
+
+\item{pt.size}{point size}
+
+\item{font.size}{font size}
+
+\item{group.by}{a column of metadata from \link{Metadata} used as grouping label for the spatial entities}
+
+\item{label}{whether labels are visualized or not}
+
+\item{trend}{inserting a trend line two the scatter plot}
+}
+\description{
+get a scatter plot between two features
+}