--- a
+++ b/man/vrCoordinates.Rd
@@ -0,0 +1,67 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/allgenerics.R, R/objects.R, R/assay.R,
+%   R/image.R
+\name{vrCoordinates}
+\alias{vrCoordinates}
+\alias{vrCoordinates,VoltRon-method}
+\alias{vrCoordinates,vrAssay-method}
+\alias{vrCoordinates,vrAssayV2-method}
+\alias{vrCoordinates,vrImage-method}
+\alias{vrCoordinates,vrSpatial-method}
+\alias{vrCoordinates<-,VoltRon-method}
+\alias{vrCoordinates<-,vrAssay-method}
+\alias{vrCoordinates<-,vrAssayV2-method}
+\alias{vrCoordinates<-,vrImage-method}
+\alias{vrCoordinates<-,vrSpatial-method}
+\alias{vrCoordinates<-}
+\title{vrCoordinates}
+\usage{
+vrCoordinates(object, ...)
+
+\S4method{vrCoordinates}{VoltRon}(
+  object,
+  assay = NULL,
+  image_name = NULL,
+  spatial_name = NULL,
+  reg = FALSE
+)
+
+\S4method{vrCoordinates}{vrAssay}(object, image_name = NULL, spatial_name = NULL, reg = FALSE)
+
+\S4method{vrCoordinates}{vrAssayV2}(object, image_name = NULL, spatial_name = NULL, reg = FALSE)
+
+\S4method{vrCoordinates}{vrImage}(object)
+
+\S4method{vrCoordinates}{vrSpatial}(object)
+
+\S4method{vrCoordinates}{VoltRon}(object, image_name = NULL, spatial_name = NULL, reg = FALSE) <- value
+
+\S4method{vrCoordinates}{vrAssay}(object, image_name = NULL, spatial_name = NULL, reg = FALSE) <- value
+
+\S4method{vrCoordinates}{vrAssayV2}(object, image_name = NULL, spatial_name = NULL, reg = FALSE) <- value
+
+\S4method{vrCoordinates}{vrImage}(object) <- value
+
+\S4method{vrCoordinates}{vrSpatial}(object) <- value
+
+vrCoordinates(object, ...) <- value
+}
+\arguments{
+\item{object}{a VoltRon, vrAssay or vrSpatial object.}
+
+\item{...}{arguments passed to other methods.}
+
+\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. 
+if NULL, the default assay will be used, see \link{vrMainAssay}.}
+
+\item{image_name}{(deprecated, use \code{spatial_name}) the name/key of the image associated with the coordinates}
+
+\item{spatial_name}{the name/key of the spatial system associated with the coordinates}
+
+\item{reg}{TRUE if registered coordinates of the main image (\link{vrMainImage}) is requested}
+
+\item{value}{coordinates}
+}
+\description{
+Given a VoltRon, vrAssay or vrSpatial object, get and set the coordinates of assays and coordinate systems
+}