--- a +++ b/man/vrBarPlot.Rd @@ -0,0 +1,44 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/visualization.R +\name{vrBarPlot} +\alias{vrBarPlot} +\title{vrBarPlot} +\usage{ +vrBarPlot( + object, + features = NULL, + assay = NULL, + x.label = NULL, + group.by = "Sample", + split.by = NULL, + norm = TRUE, + log = FALSE, + ncol = 2, + nrow = NULL +) +} +\arguments{ +\item{object}{a VoltRon object} + +\item{features}{a set of features to be visualized, either from \link{vrFeatures} of raw or normalized data or columns of the \link{Metadata}.} + +\item{assay}{assay name (exp: Assay1) or assay class (exp: Visium, Xenium), see \link{SampleMetadata}. +if NULL, the default assay will be used, see \link{vrMainAssay}.} + +\item{x.label}{labels of the x axis} + +\item{group.by}{a column of metadata from \link{Metadata} used as grouping label for the spatial entities} + +\item{split.by}{the column to split the barplots by} + +\item{norm}{if TRUE, the normalized data is used} + +\item{log}{if TRUE, data features (excluding metadata features) will be log transformed} + +\item{ncol}{column wise number of plots, for \link{ggarrange}} + +\item{nrow}{row wise number of plots, for \link{ggarrange}} +} +\description{ +vrBarPlot +}