--- a
+++ b/man/registerSpatialData.Rd
@@ -0,0 +1,34 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/registration.R
+\name{registerSpatialData}
+\alias{registerSpatialData}
+\title{registerSpatialData}
+\usage{
+registerSpatialData(
+  object_list = NULL,
+  reference_spatdata = NULL,
+  query_spatdata = NULL,
+  keypoints = NULL,
+  mapping_parameters = list(),
+  interactive = TRUE,
+  shiny.options = list(launch.browser = getOption("shiny.launch.browser", interactive()))
+)
+}
+\arguments{
+\item{object_list}{a list of VoltRon (or Seurat) objects}
+
+\item{reference_spatdata}{a reference spatial data set, used only if \code{object_list} is \code{NULL}}
+
+\item{query_spatdata}{a query spatial data set, used only if \code{object_list} is \code{NULL}}
+
+\item{keypoints}{(DEPRECATED) a list of tables, each points to matching keypoints from registered images.}
+
+\item{mapping_parameters}{for manual image registration, a list of tables, each points to matching keypoints from registered images, and for automated image registration, a set of mapping parameters}
+
+\item{interactive}{if TRUE, the shiny application for image registration will be triggered, otherwise 'mapping_parameters' or 'keypoints' should be defined.}
+
+\item{shiny.options}{a list of shiny options (launch.browser, host, port etc.) passed \code{options} arguement of \link{shinyApp}. For more information, see \link{runApp}}
+}
+\description{
+A mini shiny app to for registering images and spatial coordinates of multiple consequtive spatial datasets
+}