|
a |
|
b/man/registerSpatialData.Rd |
|
|
1 |
% Generated by roxygen2: do not edit by hand |
|
|
2 |
% Please edit documentation in R/registration.R |
|
|
3 |
\name{registerSpatialData} |
|
|
4 |
\alias{registerSpatialData} |
|
|
5 |
\title{registerSpatialData} |
|
|
6 |
\usage{ |
|
|
7 |
registerSpatialData( |
|
|
8 |
object_list = NULL, |
|
|
9 |
reference_spatdata = NULL, |
|
|
10 |
query_spatdata = NULL, |
|
|
11 |
keypoints = NULL, |
|
|
12 |
mapping_parameters = list(), |
|
|
13 |
interactive = TRUE, |
|
|
14 |
shiny.options = list(launch.browser = getOption("shiny.launch.browser", interactive())) |
|
|
15 |
) |
|
|
16 |
} |
|
|
17 |
\arguments{ |
|
|
18 |
\item{object_list}{a list of VoltRon (or Seurat) objects} |
|
|
19 |
|
|
|
20 |
\item{reference_spatdata}{a reference spatial data set, used only if \code{object_list} is \code{NULL}} |
|
|
21 |
|
|
|
22 |
\item{query_spatdata}{a query spatial data set, used only if \code{object_list} is \code{NULL}} |
|
|
23 |
|
|
|
24 |
\item{keypoints}{(DEPRECATED) a list of tables, each points to matching keypoints from registered images.} |
|
|
25 |
|
|
|
26 |
\item{mapping_parameters}{for manual image registration, a list of tables, each points to matching keypoints from registered images, and for automated image registration, a set of mapping parameters} |
|
|
27 |
|
|
|
28 |
\item{interactive}{if TRUE, the shiny application for image registration will be triggered, otherwise 'mapping_parameters' or 'keypoints' should be defined.} |
|
|
29 |
|
|
|
30 |
\item{shiny.options}{a list of shiny options (launch.browser, host, port etc.) passed \code{options} arguement of \link{shinyApp}. For more information, see \link{runApp}} |
|
|
31 |
} |
|
|
32 |
\description{ |
|
|
33 |
A mini shiny app to for registering images and spatial coordinates of multiple consequtive spatial datasets |
|
|
34 |
} |